Variant report

Variant	rs13163589
Chromosome Location	chr5:151627279-151627280
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11950895	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11951018	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11951697	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13174082	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17663037	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17663169	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2112694	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2112695	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7724185	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023828	chr5:151522149-151956217	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv830519	chr5:151588627-151800192	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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