Variant report

Variant	rs13165072
Chromosome Location	chr5:116772518-116772519
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs13164296	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13164536	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13175962	0.98[EUR][1000 genomes]
rs13176313	0.98[EUR][1000 genomes]
rs13176472	0.98[EUR][1000 genomes]
rs13176885	0.94[EUR][1000 genomes]
rs13177703	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13180710	0.98[EUR][1000 genomes]
rs13180714	0.98[EUR][1000 genomes]
rs13184765	0.86[EUR][1000 genomes]
rs1366184	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17141717	1.00[CEU][hapmap];0.98[EUR][1000 genomes]
rs17398971	0.86[EUR][1000 genomes]
rs17839480	0.82[EUR][1000 genomes]
rs1820667	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs34360904	0.82[EUR][1000 genomes]
rs34374339	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35183133	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs35515870	0.82[EUR][1000 genomes]
rs35753719	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs55788310	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs55912291	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62378254	0.98[EUR][1000 genomes]
rs62378255	0.98[EUR][1000 genomes]
rs62378256	0.98[EUR][1000 genomes]
rs62378257	0.98[EUR][1000 genomes]
rs62378258	0.98[EUR][1000 genomes]
rs62380061	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs66497971	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs67546109	0.98[EUR][1000 genomes]
rs6861435	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6867203	1.00[CEU][hapmap]
rs6887390	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs962006	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs962007	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830457	chr5:116724777-116875060	Active TSS Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:116770200-116773000	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr5:116770400-116772800	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr5:116770400-116773600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr5:116770600-116772800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr5:116770600-116774600	Weak transcription	Stomach Smooth Muscle	stomach
6	chr5:116770800-116772800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr5:116770800-116772800	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr5:116770800-116773000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chr5:116770800-116773200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
10	chr5:116771000-116773000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr5:116771000-116773400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr5:116772200-116773000	Weak transcription	Colon Smooth Muscle	Colon
13	chr5:116772200-116773800	Enhancers	HUES48 Cell Line	embryonic stem cell

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