Variant report

Variant	rs13165296
Chromosome Location	chr5:59581239-59581240
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs13168619	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13172481	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1423246	0.81[GIH][hapmap]
rs16874969	1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap]
rs34038162	0.92[EUR][1000 genomes]
rs35335033	0.81[EUR][1000 genomes]
rs35644384	0.92[EUR][1000 genomes]
rs35914313	0.92[EUR][1000 genomes]
rs4349679	0.93[GIH][hapmap];0.95[TSI][hapmap]
rs4394088	0.96[GIH][hapmap];0.95[TSI][hapmap]
rs4502776	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4580739	0.81[GIH][hapmap]
rs4699954	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs56341652	0.92[EUR][1000 genomes]
rs6860626	0.92[EUR][1000 genomes]
rs6861084	0.92[EUR][1000 genomes]
rs6862735	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[GIH][hapmap];0.86[JPT][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap];0.92[EUR][1000 genomes]
rs6869495	1.00[CEU][hapmap];0.93[GIH][hapmap];0.90[TSI][hapmap];0.81[EUR][1000 genomes]
rs6897671	0.81[GIH][hapmap]
rs71630006	0.92[EUR][1000 genomes]
rs7706560	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7711093	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap]
rs7733705	1.00[CEU][hapmap];0.86[CHB][hapmap];0.86[CHD][hapmap];1.00[GIH][hapmap];0.86[JPT][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap];0.92[EUR][1000 genomes]
rs7735958	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs7737905	0.81[GIH][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025856	chr5:59188419-59928852	Enhancers Strong transcription Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv830316	chr5:59480269-59689829	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:59559600-59584800	Weak transcription	Primary B cells from cord blood	blood
2	chr5:59567400-59581600	Weak transcription	Fetal Brain Male	brain
3	chr5:59577800-59581400	Weak transcription	HepG2	liver
4	chr5:59578600-59581600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr5:59579800-59581600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
6	chr5:59580800-59582200	Active TSS	Aorta	Aorta
7	chr5:59581000-59583400	Enhancers	Primary monocytes fromperipheralblood	blood
8	chr5:59581200-59581400	Enhancers	Monocytes-CD14+_RO01746	blood

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