Variant report

Variant	rs13168674
Chromosome Location	chr5:91791151-91791152
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10051854	0.86[CHB][hapmap];1.00[YRI][hapmap]
rs12515713	0.89[ASN][1000 genomes]
rs13189339	0.82[CHB][hapmap];0.81[CHD][hapmap]
rs13361967	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28599560	0.84[ASN][1000 genomes]
rs34135545	0.88[ASN][1000 genomes]
rs34957590	0.88[ASN][1000 genomes]
rs35148225	0.89[ASN][1000 genomes]
rs35280400	0.82[EUR][1000 genomes]
rs36081011	0.88[ASN][1000 genomes]
rs36097806	0.88[ASN][1000 genomes]
rs4260649	0.95[CHB][hapmap];0.84[JPT][hapmap];1.00[YRI][hapmap];0.88[ASN][1000 genomes]
rs4351128	0.88[ASN][1000 genomes]
rs4398622	0.90[CHB][hapmap];0.89[CHD][hapmap];0.86[LWK][hapmap];0.80[MKK][hapmap];1.00[YRI][hapmap]
rs4869411	0.88[ASN][1000 genomes]
rs55908760	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60306725	0.84[EUR][1000 genomes]
rs7724286	0.86[CHB][hapmap];0.84[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2763469	chr5:91759081-91812497	Enhancers ZNF genes & repeats Weak transcription Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs13168674	C5orf36	cis	parietal	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:91790600-91791200	Active TSS	GM12878-XiMat	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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