The 2.0 version of rSNPBase

Variant report

Variant rs13169711
Chromosome Location chr5:60660401-60660402
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:67 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:60638400-60665200 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
2 chr5:60640400-60665600 Weak transcription Gastric stomach
3 chr5:60641600-60667400 Weak transcription Fetal Kidney kidney
4 chr5:60643400-60660800 Weak transcription Esophagus oesophagus
5 chr5:60643400-60663200 Weak transcription Spleen Spleen
6 chr5:60648200-60664600 Weak transcription Aorta Aorta
7 chr5:60649000-60666400 Weak transcription Rectal Mucosa Donor 31 rectum
8 chr5:60649400-60664400 Weak transcription Fetal Adrenal Gland Adrenal Gland
9 chr5:60650000-60664600 Weak transcription Ovary ovary
10 chr5:60653400-60667200 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
11 chr5:60653600-60666800 Weak transcription NHEK skin
12 chr5:60653600-60667400 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
13 chr5:60653800-60681200 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
14 chr5:60654000-60667400 Weak transcription Hela-S3 cervix
15 chr5:60654000-60681400 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
16 chr5:60654200-60664800 Weak transcription Brain Germinal Matrix brain
17 chr5:60654800-60664800 Weak transcription Primary T cells from cord blood blood
18 chr5:60655000-60662400 Weak transcription Stomach Mucosa stomach
19 chr5:60656200-60663200 Weak transcription Breast Myoepithelial Primary Cells Breast
20 chr5:60656800-60663200 Enhancers Brain Anterior Caudate brain
21 chr5:60656800-60666600 Weak transcription HUES6 Cell Line embryonic stem cell
22 chr5:60657000-60666800 Weak transcription Small Intestine intestine
23 chr5:60657200-60664600 Weak transcription Liver Liver
24 chr5:60657400-60661800 Strong transcription Monocytes-CD14+_RO01746 blood
25 chr5:60657600-60676400 Weak transcription Cortex derived primary cultured neurospheres brain
26 chr5:60658200-60674400 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
27 chr5:60658400-60666800 Weak transcription Fetal Intestine Small intestine
28 chr5:60658600-60662000 Weak transcription Primary mononuclear cells fromperipheralblood Blood
29 chr5:60658800-60686600 Weak transcription Fetal Stomach stomach
30 chr5:60659000-60662000 Weak transcription NHLF lung
31 chr5:60659000-60662600 Weak transcription Psoas Muscle Psoas
32 chr5:60659000-60662600 Weak transcription Right Atrium heart
33 chr5:60659000-60662800 Weak transcription Brain Cingulate Gyrus brain
34 chr5:60659000-60664600 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
35 chr5:60659000-60664600 Weak transcription Sigmoid Colon Sigmoid Colon
36 chr5:60659000-60665200 Weak transcription Lung lung
37 chr5:60659000-60666400 Weak transcription Left Ventricle heart
38 chr5:60659000-60666400 Weak transcription Rectal Mucosa Donor 29 rectum
39 chr5:60659000-60666600 Weak transcription Fetal Intestine Large intestine
40 chr5:60659000-60667000 Weak transcription HUES64 Cell Line embryonic stem cell
41 chr5:60659000-60674600 Weak transcription Pancreas Pancrea
42 chr5:60659000-60681600 Weak transcription Duodenum Smooth Muscle Duodenum
43 chr5:60659000-60703800 Weak transcription Primary B cells from cord blood blood
44 chr5:60659200-60662200 Weak transcription Brain Inferior Temporal Lobe brain
45 chr5:60659200-60662600 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
46 chr5:60659200-60665200 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
47 chr5:60659200-60666400 Weak transcription Duodenum Mucosa Duodenum
48 chr5:60659200-60686600 Weak transcription Primary monocytes fromperipheralblood blood
49 chr5:60659400-60661400 Weak transcription Brain Substantia Nigra brain
50 chr5:60659400-60663200 Weak transcription NH-A brain

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Last update: Aug 31, 2015