Variant report

Variant	rs13171356
Chromosome Location	chr5:116588730-116588731
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10040337	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10042197	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10070521	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10073120	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10073125	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10477560	0.85[EUR][1000 genomes]
rs10478336	0.89[EUR][1000 genomes]
rs10478340	0.85[EUR][1000 genomes]
rs10478341	0.84[EUR][1000 genomes]
rs10478342	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13170929	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13182834	0.93[EUR][1000 genomes]
rs1494827	0.85[EUR][1000 genomes]
rs1494828	0.85[EUR][1000 genomes]
rs1845562	0.85[EUR][1000 genomes]
rs1908407	0.89[EUR][1000 genomes]
rs1979732	0.81[EUR][1000 genomes]
rs2220859	0.85[EUR][1000 genomes]
rs2416466	0.85[EUR][1000 genomes]
rs34479127	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34498712	0.86[EUR][1000 genomes]
rs4580811	0.91[CEU][hapmap];0.85[EUR][1000 genomes]
rs6595019	0.91[EUR][1000 genomes]
rs66726800	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6874362	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6875387	0.90[EUR][1000 genomes]
rs7447805	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7703141	0.93[EUR][1000 genomes]
rs7708893	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7710998	0.83[EUR][1000 genomes]
rs7711973	0.81[EUR][1000 genomes]
rs7714567	0.93[EUR][1000 genomes]
rs7716765	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7732638	0.91[EUR][1000 genomes]
rs7735582	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7737236	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015741	chr5:116525936-116665270	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:116582400-116591400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr5:116583000-116591800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr5:116586200-116589200	Weak transcription	Brain Cingulate Gyrus	brain
4	chr5:116586200-116590000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr5:116586200-116590000	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr5:116586800-116591200	Weak transcription	Brain Angular Gyrus	brain
7	chr5:116587800-116591600	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr5:116588200-116591200	Enhancers	Brain Hippocampus Middle	brain
9	chr5:116588400-116589600	Weak transcription	Brain Substantia Nigra	brain
10	chr5:116588600-116589200	Enhancers	iPS-20b Cell Line	embryonic stem cell

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