The 2.0 version of rSNPBase

Variant report

Variant rs13171682
Chromosome Location chr5:80789039-80789040
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:38 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:80766200-80800000 Weak transcription Primary T killer memory cells from peripheral blood blood
2 chr5:80770000-80790400 Weak transcription Right Ventricle heart
3 chr5:80770000-80797800 Weak transcription GM12878-XiMat blood
4 chr5:80770000-80800200 Weak transcription Brain Anterior Caudate brain
5 chr5:80770000-80801600 Weak transcription Skeletal Muscle Male skeletal muscle
6 chr5:80770000-80801600 Weak transcription NHLF lung
7 chr5:80770000-80803000 Weak transcription Fetal Kidney kidney
8 chr5:80770000-80811000 Weak transcription Fetal Muscle Trunk muscle
9 chr5:80770000-80812000 Weak transcription Left Ventricle heart
10 chr5:80770200-80794800 Weak transcription Fetal Brain Female brain
11 chr5:80770200-80811000 Weak transcription Colon Smooth Muscle Colon
12 chr5:80770400-80793600 Weak transcription Brain Germinal Matrix brain
13 chr5:80770400-80801600 Weak transcription Ovary ovary
14 chr5:80770400-80808200 Weak transcription Fetal Stomach stomach
15 chr5:80771200-80799600 Weak transcription Primary T helper cells PMA-I stimulated --
16 chr5:80778400-80797800 Weak transcription Thymus Thymus
17 chr5:80778800-80789600 Weak transcription Breast Myoepithelial Primary Cells Breast
18 chr5:80778800-80797800 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
19 chr5:80778800-80797800 Weak transcription Primary hematopoietic stem cells short term culture blood
20 chr5:80778800-80797800 Weak transcription Cortex derived primary cultured neurospheres brain
21 chr5:80778800-80800400 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
22 chr5:80779000-80794800 Weak transcription Fetal Lung lung
23 chr5:80779000-80798000 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
24 chr5:80779000-80809600 Weak transcription Primary T cells from cord blood blood
25 chr5:80779000-80830200 Weak transcription Primary B cells from cord blood blood
26 chr5:80779000-80834400 Weak transcription Fetal Muscle Leg muscle
27 chr5:80779200-80801800 Weak transcription Fetal Heart heart
28 chr5:80780000-80793800 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
29 chr5:80782800-80801000 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
30 chr5:80783000-80791000 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
31 chr5:80783000-80801400 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
32 chr5:80785200-80790000 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
33 chr5:80785800-80797800 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
34 chr5:80787400-80797800 Weak transcription Primary hematopoietic stem cells blood
35 chr5:80787800-80789800 Strong transcription Fetal Thymus thymus
36 chr5:80787800-80790000 Weak transcription Dnd41 blood
37 chr5:80788400-80801600 Weak transcription Monocytes-CD14+_RO01746 blood
38 chr5:80788800-80799600 Weak transcription Fetal Brain Male brain

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Last update: Aug 31, 2015