Variant report

Variant	rs1318004
Chromosome Location	chr2:21214209-21214210
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10495713	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1318006	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1320143	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1320144	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1320145	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1344063	0.86[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs17041662	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17041663	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17041679	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34059329	0.90[EUR][1000 genomes]
rs34335269	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35131127	0.89[EUR][1000 genomes]
rs35893087	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4665639	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4665642	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4665790	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs56213756	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56327713	0.89[EUR][1000 genomes]
rs56403064	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62120841	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6707950	0.85[EUR][1000 genomes]
rs6721844	0.93[EUR][1000 genomes]
rs6722374	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6733447	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7571469	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9789416	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:21207200-21214600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr2:21208600-21214600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr2:21210200-21215600	Weak transcription	Colon Smooth Muscle	Colon
4	chr2:21211200-21218200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr2:21211400-21214600	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr2:21212200-21214400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr2:21212400-21215200	Enhancers	Fetal Muscle Leg	muscle
8	chr2:21213000-21214400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr2:21213000-21214600	Weak transcription	Adipose Nuclei	Adipose
10	chr2:21214000-21214600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr2:21214000-21215000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr2:21214000-21217000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr2:21214200-21215000	Enhancers	HUES6 Cell Line	embryonic stem cell
14	chr2:21214200-21215200	Enhancers	Breast Myoepithelial Primary Cells	Breast
15	chr2:21214200-21215200	Enhancers	Aorta	Aorta

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links