Variant report

Variant	rs13181517
Chromosome Location	chr5:60527421-60527422
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10052753	1.00[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs10054247	0.81[EUR][1000 genomes]
rs10055076	0.81[EUR][1000 genomes]
rs10056472	0.86[AFR][1000 genomes]
rs10069718	0.85[ASN][1000 genomes]
rs10075959	1.00[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs10076568	1.00[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs10939894	0.86[AFR][1000 genomes]
rs10939895	0.86[AFR][1000 genomes]
rs11741431	0.81[EUR][1000 genomes]
rs11744226	0.94[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs11745179	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11745233	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11745696	1.00[AFR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11747588	0.86[AFR][1000 genomes]
rs11750566	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11949390	0.86[AFR][1000 genomes]
rs11954384	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13181515	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13183007	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13183464	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13186053	0.94[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs13190305	0.94[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs159365	0.84[ASN][1000 genomes]
rs28409386	0.94[AFR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34635	0.87[ASN][1000 genomes]
rs35185283	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62366231	0.86[AFR][1000 genomes]
rs67749311	0.86[AFR][1000 genomes]
rs72759289	0.81[EUR][1000 genomes]
rs72759299	0.86[AFR][1000 genomes]
rs9291707	0.88[AFR][1000 genomes];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034038	chr5:60375328-60607654	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
2	nsv1028884	chr5:60414723-60732779	Bivalent Enhancer Enhancers Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	46 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:60524600-60528600	Weak transcription	HSMMtube	muscle
2	chr5:60525200-60528000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr5:60525400-60528000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr5:60525600-60528400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr5:60525600-60529600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr5:60525800-60528000	Weak transcription	Osteobl	bone
7	chr5:60525800-60528400	Weak transcription	NHLF	lung
8	chr5:60525800-60529600	Weak transcription	Stomach Mucosa	stomach
9	chr5:60526600-60528400	Weak transcription	Fetal Brain Male	brain
10	chr5:60526800-60529400	Weak transcription	Pancreas	Pancrea
11	chr5:60527400-60527600	Weak transcription	HSMM	muscle

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