Variant report
| Variant | rs13182827 |
|---|---|
| Chromosome Location | chr5:151586924-151586925 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:21)
| rs_ID | r2[population] |
|---|---|
| rs11950895 | 0.90[ASN][1000 genomes] |
| rs11951018 | 1.00[CHB][hapmap];0.80[ASN][1000 genomes] |
| rs11951697 | 0.90[ASN][1000 genomes] |
| rs11955735 | 0.82[EUR][1000 genomes] |
| rs12515700 | 0.91[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs12717855 | 0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs13174082 | 0.80[ASN][1000 genomes] |
| rs1366608 | 0.94[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs1376640 | 0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs17663037 | 0.90[ASN][1000 genomes] |
| rs17663169 | 0.80[ASN][1000 genomes] |
| rs1864198 | 0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs2112694 | 0.80[ASN][1000 genomes] |
| rs2112695 | 0.80[ASN][1000 genomes] |
| rs34789586 | 0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs6579922 | 0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs6870899 | 0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs6878435 | 0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs6888966 | 0.91[EUR][1000 genomes] |
| rs7722799 | 0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs7724185 | 0.80[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv883040 | chr5:151471642-151596273 | Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 2 | nsv1023828 | chr5:151522149-151956217 | Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| 3 | nsv5073 | chr5:151551846-151597040 | Enhancers Weak transcription ZNF genes & repeats Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr5:151586600-151587000 | Active TSS | HUES6 Cell Line | embryonic stem cell |
