Variant report

Variant	rs13184765
Chromosome Location	chr5:116751170-116751171
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:61)
Chromatin interactive
region (count:0)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr5:116751135-116751185	HRPEpiC	eye:	n/a
2	chr5:116751135-116751185	HUVEC	blood vessel:	n/a
3	chr5:116751135-116751185	AG09319	gingival:	n/a
4	chr5:116751135-116751185	ECC-1	luminal epithelium:	n/a
5	chr5:116751135-116751185	HNPCEpiC	eye:	n/a
6	chr5:116751135-116751185	AG04449	skin:	fetal
7	chr5:116751135-116751185	HCM	heart:	n/a
8	chr5:116751135-116751185	H1-hESC	embryonic stem cell:	embryo
9	chr5:116751135-116751185	T-47D	breast:	n/a
10	chr5:116751135-116751185	GM12878	blood:	n/a
11	chr5:116751135-116751185	GM06990	blood:	n/a
12	chr5:116751135-116751185	HRCEpiC	kidney:	n/a
13	chr5:116751135-116751185	HCF	heart:	n/a
14	chr5:116751135-116751185	HEK293	kidney:	embryo
15	chr5:116751135-116751185	PANC-1	pancreas:	n/a
16	chr5:116751135-116751185	SK-N-SH	brain:	n/a
17	chr5:116751135-116751185	PFSK-1	brain:	n/a
18	chr5:116751135-116751185	MCF10A-Er-Src	breast:	n/a
19	chr5:116751135-116751185	NB4	blood:	n/a
20	chr5:116751135-116751185	SK-N-MC	brain:	n/a
21	chr5:116751135-116751185	RPTEC	kidney:	n/a
22	chr5:116751135-116751185	NHBE	bronchial:	n/a
23	chr5:116751135-116751185	NH-A	brain:	n/a
24	chr5:116751135-116751185	AG04450	lung:	fetal
25	chr5:116751135-116751185	HRE	kidney:	n/a
26	chr5:116751135-116751185	HIPEpiC	eye:	n/a
27	chr5:116751135-116751185	NT2-D1	testis:	n/a
28	chr5:116751135-116751185	LNCaP	prostate:	n/a
29	chr5:116751135-116751185	K562	blood:	n/a
30	chr5:116751135-116751185	AG09309	skin:	n/a
31	chr5:116751135-116751185	HCPEpiC	choroid plexus:	n/a
32	chr5:116751135-116751185	HepG2	liver:	n/a
33	chr5:116751135-116751185	HMEC	breast:	n/a
34	chr5:116751135-116751185	CMK	blood:	n/a
35	chr5:116751135-116751185	HEEpiC	esophagus:	n/a
36	chr5:116751135-116751185	HPAEpiC	pulmonary alveolar:	n/a
37	chr5:116751135-116751185	SK-N-SH_RA	brain:	n/a
38	chr5:116751135-116751185	BE2_C	brain:	n/a
39	chr5:116751135-116751185	MCF-7	breast:	n/a
40	chr5:116751135-116751185	Hela-S3	cervix:	n/a
41	chr5:116751135-116751185	U87	brain:	n/a
42	chr5:116751135-116751185	AG10803	skin:	n/a
43	chr5:116751135-116751185	AoSMC	blood vessel:	n/a
44	chr5:116751135-116751185	Jurkat	blood:	n/a
45	chr5:116751135-116751185	HL-60	blood:	n/a
46	chr5:116751135-116751185	A549	lung:	n/a
47	chr5:116751135-116751185	GM12891	blood:	n/a
48	chr5:116751135-116751185	PrEC	prostate:	n/a
49	chr5:116751135-116751185	Caco-2	colon:	n/a
50	chr5:116751135-116751185	GM12892	blood:	n/a

No data

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-COMMD10-5	chr5:116751084-116751435	NONHSAT147358

No data

Variant related genes	Relation type
LINC00992	CpG island

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs13164296	0.88[EUR][1000 genomes]
rs13164536	0.88[EUR][1000 genomes]
rs13165072	0.86[EUR][1000 genomes]
rs13175962	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13176313	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13176472	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13176885	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs13177703	0.88[EUR][1000 genomes]
rs13180710	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13180714	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1366184	0.88[EUR][1000 genomes]
rs17141699	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17141717	1.00[YRI][hapmap];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17398971	1.00[CEU][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17839480	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1820667	0.88[EUR][1000 genomes]
rs34360904	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs34374339	0.83[EUR][1000 genomes]
rs34676687	0.80[EUR][1000 genomes]
rs35183133	0.88[EUR][1000 genomes]
rs35515870	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs35753719	0.88[EUR][1000 genomes]
rs55788310	0.88[EUR][1000 genomes]
rs55912291	0.88[EUR][1000 genomes]
rs62378254	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62378255	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62378256	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62378257	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62378258	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62380061	0.88[EUR][1000 genomes]
rs66497971	0.88[EUR][1000 genomes]
rs67546109	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6861435	0.88[EUR][1000 genomes]
rs6887390	0.88[EUR][1000 genomes]
rs962006	0.88[EUR][1000 genomes]
rs962007	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830457	chr5:116724777-116875060	Active TSS Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv599487	chr5:116732456-116772093	Enhancers Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:116748800-116752600	Weak transcription	Fetal Lung	lung
2	chr5:116750600-116753200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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