Variant report

Variant	rs13186797
Chromosome Location	chr5:135736238-135736239
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ZNF263	chr5:135735967-135737266	HEK293-T-REx	kidney:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:135734898..135736471-chr5:135756066..135758948,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-SMAD5-8	chr5:135736198-135736315	NONHSAT103962

Variant related genes	Relation type
TRPC7	TF binding region

Extended variants
information (count: 59 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs10213769	0.84[CEU][hapmap];0.85[CHB][hapmap];0.90[JPT][hapmap]
rs11948153	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11950418	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11954403	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11957982	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13156969	0.84[CEU][hapmap];0.85[CHB][hapmap];0.81[JPT][hapmap]
rs13158017	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13158133	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13158359	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13158415	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13162436	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13164177	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13165205	0.85[EUR][1000 genomes]
rs13171723	0.83[EUR][1000 genomes]
rs13174278	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13174705	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13174755	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13177941	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13181603	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13182027	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs13185795	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1499761	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1499771	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1499772	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17211941	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17211962	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17695203	0.84[CEU][hapmap];0.85[CHB][hapmap];0.90[JPT][hapmap]
rs17762742	0.84[CEU][hapmap];0.85[CHB][hapmap];0.84[CHD][hapmap];0.90[JPT][hapmap];0.85[MEX][hapmap];0.94[TSI][hapmap]
rs17791011	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17791023	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34190055	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34223526	0.85[EUR][1000 genomes]
rs34488680	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs34665015	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34760171	0.83[EUR][1000 genomes]
rs34808451	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34934613	0.83[EUR][1000 genomes]
rs34997105	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs34999969	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35003312	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35118298	0.83[EUR][1000 genomes]
rs35175010	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35189853	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35234652	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35555318	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs35695188	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36139242	0.83[EUR][1000 genomes]
rs3756699	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs3777147	0.85[EUR][1000 genomes]
rs4501337	0.83[EUR][1000 genomes]
rs55726215	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55996753	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62385831	0.83[EUR][1000 genomes]
rs62387388	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62387410	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6871232	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71589310	0.83[EUR][1000 genomes]
rs7703358	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7705405	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs13186797	IRF1	cis	parietal	SCAN

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:135733600-135737400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr5:135735200-135737200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr5:135735200-135737400	Enhancers	H1 Cell Line	embryonic stem cell
4	chr5:135735200-135737400	Enhancers	HUES6 Cell Line	embryonic stem cell
5	chr5:135735200-135737400	Enhancers	iPS-20b Cell Line	embryonic stem cell
6	chr5:135735400-135737000	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr5:135735400-135737200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
8	chr5:135735400-135737400	Enhancers	iPS-18 Cell Line	embryonic stem cell
9	chr5:135735400-135737600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr5:135735800-135736800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr5:135735800-135738400	Weak transcription	Fetal Kidney	kidney
12	chr5:135735800-135742000	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr5:135736000-135736800	Enhancers	HUES48 Cell Line	embryonic stem cell
14	chr5:135736200-135742000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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