Variant report

Variant	rs13190153
Chromosome Location	chr5:61691062-61691063
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:10)
CpG islands
(count:0)
Chromatin interactive
region (count:7)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:10 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr5:61680148-61692922	K562	blood:	n/a	n/a
2	FOS	chr5:61690969-61691597	MCF10A-Er-Src	breast:	n/a	n/a
3	EGR1	chr5:61690958-61691284	K562	blood:	n/a	n/a
4	EGR1	chr5:61690995-61691213	K562	blood:	n/a	n/a
5	POLR2A	chr5:61690166-61692741	MCF10A-Er-Src	breast:	n/a	n/a
6	FOS	chr5:61691026-61691565	MCF10A-Er-Src	breast:	n/a	n/a
7	CEBPB	chr5:61690764-61691467	IMR90	lung:	n/a	n/a
8	RPC155	chr5:61690759-61691248	Hela-S3	cervix:	n/a	n/a
9	FOS	chr5:61690981-61691594	MCF10A-Er-Src	breast:	n/a	n/a
10	FOS	chr5:61690981-61691602	MCF10A-Er-Src	breast:	n/a	n/a

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr5:61688987..61691804-chr5:61707990..61709990,3	K562	blood:
2	chr5:61684151..61688740-chr5:61689725..61696494,7	K562	blood:
3	chr5:61675162..61677074-chr5:61689964..61691890,2	MCF-7	breast:
4	chr5:61687760..61696371-chr5:61696777..61701236,17	K562	blood:
5	chr5:61675578..61677297-chr5:61689540..61692147,2	K562	blood:
6	chr5:61682102..61684562-chr5:61689312..61693081,3	K562	blood:
7	chr5:61684677..61686970-chr5:61690927..61693209,3	K562	blood:

No data

Variant related genes	Relation type
DIMT1	TF binding region
ENSG00000086200	Chromatin interaction
ENSG00000086189	Chromatin interaction

Extended variants
information (count: 53 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs11740652	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11747516	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12655562	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13155253	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13156073	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13156695	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13169321	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13174779	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13178729	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs153859	0.85[ASN][1000 genomes]
rs153860	0.85[ASN][1000 genomes]
rs153864	0.82[AMR][1000 genomes]
rs153866	0.85[ASN][1000 genomes]
rs153873	0.85[ASN][1000 genomes]
rs16875037	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs16890618	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs16890628	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs16890634	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs16890651	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2272291	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs246198	0.83[ASN][1000 genomes]
rs246200	0.85[ASN][1000 genomes]
rs27090	0.87[ASN][1000 genomes]
rs34220654	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34596001	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs35054	0.85[ASN][1000 genomes]
rs35055	0.85[ASN][1000 genomes]
rs35058	0.85[ASN][1000 genomes]
rs35238667	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs35572300	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs35699711	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs35808056	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs35815430	0.87[EUR][1000 genomes]
rs3776612	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3776614	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3822487	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs40109	0.85[ASN][1000 genomes]
rs417822	0.85[ASN][1000 genomes]
rs4289514	0.94[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs71617428	0.82[AMR][1000 genomes]
rs7446543	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024090	chr5:61258759-61921150	Flanking Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	esv2759345	chr5:61403138-61748912	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv1020255	chr5:61451792-62031365	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
4	nsv1027539	chr5:61457762-62000008	Weak transcription Strong transcription Genic enhancers Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
5	nsv881727	chr5:61578041-61700970	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	23 gene(s)	inside rSNPs	diseases
6	nsv1033578	chr5:61606610-61911153	Active TSS Strong transcription Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
7	nsv1025145	chr5:61624735-61824265	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
8	nsv1029708	chr5:61625813-61877628	Bivalent/Poised TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
9	nsv881728	chr5:61630879-61857577	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
10	esv2757117	chr5:61649403-61748912	Weak transcription Strong transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
11	nsv598348	chr5:61650843-61895124	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
12	esv35035	chr5:61657943-61792243	Weak transcription Flanking Active TSS Active TSS Strong transcription Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs13190153	KIF2A	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:61642400-61697400	Strong transcription	HUES64 Cell Line	embryonic stem cell
2	chr5:61642600-61696000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
3	chr5:61642600-61699200	Weak transcription	Gastric	stomach
4	chr5:61643000-61697000	Strong transcription	HUES48 Cell Line	embryonic stem cell
5	chr5:61647600-61698000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr5:61656200-61698000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr5:61658400-61691800	Strong transcription	Dnd41	blood
8	chr5:61659800-61695800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr5:61661800-61698000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr5:61662000-61697800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr5:61662000-61697800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr5:61665400-61699000	Weak transcription	Esophagus	oesophagus
13	chr5:61666800-61698000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
14	chr5:61667000-61691200	Strong transcription	Primary monocytes fromperipheralblood	blood
15	chr5:61667000-61691600	Strong transcription	Monocytes-CD14+_RO01746	blood
16	chr5:61667000-61697200	Strong transcription	Primary B cells from peripheral blood	blood
17	chr5:61667400-61697200	Strong transcription	HUES6 Cell Line	embryonic stem cell
18	chr5:61667600-61697800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr5:61667600-61698000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
20	chr5:61668000-61698000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr5:61668600-61697000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
22	chr5:61670000-61697200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr5:61672000-61698600	Weak transcription	Stomach Mucosa	stomach
24	chr5:61675000-61697800	Weak transcription	Small Intestine	intestine
25	chr5:61676800-61697800	Weak transcription	Right Atrium	heart
26	chr5:61676800-61699000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr5:61679400-61692200	Strong transcription	Fetal Thymus	thymus
28	chr5:61679600-61691200	Strong transcription	Duodenum Mucosa	Duodenum
29	chr5:61679600-61697000	Strong transcription	Duodenum Smooth Muscle	Duodenum
30	chr5:61679600-61697600	Strong transcription	Liver	Liver
31	chr5:61680000-61696000	Strong transcription	HSMM	muscle
32	chr5:61680000-61697200	Strong transcription	Primary T cells fromperipheralblood	blood
33	chr5:61680000-61697200	Strong transcription	Adipose Nuclei	Adipose
34	chr5:61680200-61691200	Strong transcription	Osteobl	bone
35	chr5:61680200-61694800	Strong transcription	Rectal Mucosa Donor 29	rectum
36	chr5:61680200-61696000	Strong transcription	Skeletal Muscle Female	skeletal muscle
37	chr5:61680200-61697000	Strong transcription	Primary T cells from cord blood	blood
38	chr5:61680200-61697000	Strong transcription	Fetal Intestine Large	intestine
39	chr5:61680400-61697200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
40	chr5:61681000-61691200	Strong transcription	A549	lung
41	chr5:61682000-61697000	Strong transcription	Placenta	Placenta
42	chr5:61682200-61699000	Weak transcription	Colonic Mucosa	Colon
43	chr5:61682800-61691200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr5:61682800-61697800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
45	chr5:61683400-61691400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
46	chr5:61683400-61692000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
47	chr5:61683400-61697800	Weak transcription	Fetal Heart	heart
48	chr5:61683800-61697200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
49	chr5:61684000-61694800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
50	chr5:61684200-61698400	Strong transcription	Fetal Muscle Trunk	muscle

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