Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:150542106..150544405-chr6:150549647..150551463,2	MCF-7	breast:
2	chr6:150543237..150546880-chr6:150548388..150552037,4	K562	blood:

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11752137	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11752147	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11752703	1.00[CEU][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11752932	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11753008	1.00[ASN][1000 genomes]
rs11757696	1.00[ASN][1000 genomes]
rs13198606	1.00[ASN][1000 genomes]
rs13206701	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13207323	1.00[ASN][1000 genomes]
rs13215621	1.00[CEU][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34735685	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34901813	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35111820	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35445969	1.00[ASN][1000 genomes]
rs35548444	1.00[ASN][1000 genomes]
rs35963994	1.00[ASN][1000 genomes]
rs36001360	1.00[ASN][1000 genomes]
rs36096822	1.00[ASN][1000 genomes]
rs62440052	1.00[ASN][1000 genomes]
rs71570211	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71570212	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71570213	1.00[ASN][1000 genomes]
rs73007973	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830843	chr6:150517411-150691173	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150534000-150551000	Weak transcription	Right Atrium	heart
2	chr6:150534600-150548600	Weak transcription	Left Ventricle	heart
3	chr6:150537200-150550800	Weak transcription	HMEC	breast
4	chr6:150537200-150550800	Weak transcription	NHEK	skin
5	chr6:150540200-150550600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr6:150540200-150550800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr6:150542200-150545800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr6:150542600-150544200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr6:150542600-150548000	Weak transcription	Fetal Brain Female	brain
10	chr6:150542600-150550600	Weak transcription	Cortex derived primary cultured neurospheres	brain
11	chr6:150542800-150544200	Weak transcription	Fetal Brain Male	brain
12	chr6:150542800-150545800	Weak transcription	Fetal Heart	heart
13	chr6:150542800-150548000	Weak transcription	Skeletal Muscle Female	skeletal muscle
14	chr6:150542800-150550800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr6:150543000-150550800	Weak transcription	K562	blood
16	chr6:150543200-150548000	Weak transcription	Skeletal Muscle Male	skeletal muscle
17	chr6:150543400-150544800	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived

Quick Search: