Variant report

Variant	rs13194950
Chromosome Location	chr6:12844775-12844776
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:12638080..12638930-chr6:12844650..12845576,4	MCF-7	breast:

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs13191496	1.00[ASW][hapmap];1.00[CEU][hapmap];0.85[GIH][hapmap];0.82[MKK][hapmap];0.87[TSI][hapmap];0.81[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13198167	1.00[CEU][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13205779	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13211722	1.00[CEU][hapmap]
rs13215145	1.00[CEU][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes]
rs13215271	1.00[CEU][hapmap];0.92[YRI][hapmap];0.85[AFR][1000 genomes]
rs13215290	1.00[CEU][hapmap]
rs13215300	1.00[ASW][hapmap];1.00[CEU][hapmap];0.85[GIH][hapmap];0.93[YRI][hapmap];0.85[AFR][1000 genomes]
rs16873462	1.00[CEU][hapmap];0.89[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34348949	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35227817	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35395772	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35621699	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35784087	0.85[AFR][1000 genomes]
rs35954478	1.00[EUR][1000 genomes]
rs36043593	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55637633	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55803153	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62389221	0.85[AFR][1000 genomes]
rs62389889	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62389892	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62389893	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62389894	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62389900	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6900427	1.00[CEU][hapmap];1.00[GIH][hapmap];0.87[TSI][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6912532	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6914233	1.00[CEU][hapmap];1.00[GIH][hapmap];0.87[TSI][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6914467	1.00[CEU][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6924353	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6927781	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6930661	1.00[CEU][hapmap]
rs7741088	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3521000	chr6:12561306-13128519	Enhancers Weak transcription Bivalent/Poised TSS Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv3521001	chr6:12561306-13128519	Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv830587	chr6:12769661-12939875	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv830588	chr6:12793530-12972493	Enhancers Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:12838400-12844800	Weak transcription	Brain Germinal Matrix	brain
2	chr6:12838600-12849400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr6:12840000-12845800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr6:12841000-12845200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr6:12841000-12849200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr6:12843200-12845000	Weak transcription	HSMM	muscle
7	chr6:12844600-12846400	Enhancers	H1 Cell Line	embryonic stem cell

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