Variant report

Variant	rs13195599
Chromosome Location	chr6:150619540-150619541
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs12529036	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4870445	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6911003	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6921485	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7356994	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9371388	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9371901	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9397262	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9478665	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830843	chr6:150517411-150691173	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	esv2763602	chr6:150581193-150720666	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs13195599	PPP1R14C	cis	parietal	SCAN

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150617200-150620200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:150617400-150619600	ZNF genes & repeats	K562	blood
3	chr6:150617800-150619600	ZNF genes & repeats	Placenta	Placenta
4	chr6:150618000-150619600	Enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr6:150618200-150619600	ZNF genes & repeats	Muscle Satellite Cultured Cells	--
6	chr6:150618400-150619600	ZNF genes & repeats	Adipose Nuclei	Adipose
7	chr6:150618400-150619600	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
8	chr6:150618800-150619600	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr6:150618800-150619600	Enhancers	NHEK	skin
10	chr6:150619000-150619600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr6:150619200-150620200	Enhancers	HMEC	breast
12	chr6:150619200-150621000	Weak transcription	Skeletal Muscle Male	skeletal muscle
13	chr6:150619400-150619600	Enhancers	Osteobl	bone
14	chr6:150619400-150620600	Weak transcription	Fetal Muscle Leg	muscle
15	chr6:150619400-150622800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr6:150619400-150623000	Weak transcription	NH-A	brain
17	chr6:150619400-150623200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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