Variant report

Variant	rs13196135
Chromosome Location	chr6:12804875-12804876
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:12802245..12807092-chr6:12811208..12815324,5	MCF-7	breast:
2	chr6:12775970..12778165-chr6:12803153..12805714,2	K562	blood:

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10948235	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10948244	0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10948247	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11753864	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11758650	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12523719	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12524974	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12530186	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs13203774	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs13203883	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13214313	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs13217579	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1412738	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1412752	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1412753	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs16873383	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1953089	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2095123	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2327616	0.90[EUR][1000 genomes]
rs2327617	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2327619	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs28451666	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs34498965	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4714870	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6458473	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6909834	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6913075	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6916334	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6917493	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6922482	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6930873	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6935309	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6941624	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7747656	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7757835	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7758513	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7760140	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7760286	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7762417	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs883947	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9296464	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs944767	1.00[ASN][1000 genomes]
rs9463134	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9463136	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9463137	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9463138	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9472558	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9472583	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9472587	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9472590	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9472594	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9472595	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs950720	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3521000	chr6:12561306-13128519	Enhancers Weak transcription Bivalent/Poised TSS Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv3521001	chr6:12561306-13128519	Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv830587	chr6:12769661-12939875	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv830588	chr6:12793530-12972493	Enhancers Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:12801800-12805400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr6:12804800-12805600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr6:12804800-12808200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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