Variant report

Variant	rs13198606
Chromosome Location	chr6:150572568-150572569
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:150571832..150575013-chr6:150575106..150579101,3	K562	blood:
2	chr6:150571087..150575708-chr6:150576058..150580847,8	MCF-7	breast:
3	chr6:150572423..150575831-chr6:150576136..150578517,3	MCF-7	breast:
4	chr6:150572452..150574254-chr6:150575448..150578031,3	K562	blood:
5	chr6:150564776..150567057-chr6:150571818..150574314,2	K562	blood:

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11752137	1.00[ASN][1000 genomes]
rs11752147	1.00[ASN][1000 genomes]
rs11752703	1.00[ASN][1000 genomes]
rs11752932	1.00[ASN][1000 genomes]
rs11753008	1.00[ASN][1000 genomes]
rs11757696	1.00[ASN][1000 genomes]
rs13193924	1.00[ASN][1000 genomes]
rs13206701	1.00[ASN][1000 genomes]
rs13207323	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13215621	1.00[ASN][1000 genomes]
rs34123628	1.00[EUR][1000 genomes]
rs34735685	1.00[ASN][1000 genomes]
rs34901813	1.00[ASN][1000 genomes]
rs35111820	1.00[ASN][1000 genomes]
rs35445969	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35548444	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35963994	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36001360	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36096822	1.00[ASN][1000 genomes]
rs62440052	1.00[ASN][1000 genomes]
rs71570211	1.00[ASN][1000 genomes]
rs71570212	1.00[ASN][1000 genomes]
rs71570213	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73007973	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830843	chr6:150517411-150691173	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150569600-150574000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr6:150569600-150576800	Weak transcription	Esophagus	oesophagus
3	chr6:150569800-150573400	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr6:150569800-150576400	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr6:150569800-150577000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr6:150570200-150573600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr6:150570400-150575000	Enhancers	Fetal Muscle Leg	muscle
8	chr6:150570400-150576000	Enhancers	Skeletal Muscle Female	skeletal muscle
9	chr6:150570400-150577600	Enhancers	Skeletal Muscle Male	skeletal muscle
10	chr6:150570600-150573400	Enhancers	HSMMtube	muscle
11	chr6:150571000-150572600	Enhancers	Fetal Muscle Trunk	muscle
12	chr6:150571000-150574200	Enhancers	Left Ventricle	heart
13	chr6:150571000-150576800	Enhancers	HMEC	breast
14	chr6:150571000-150579200	Enhancers	Breast Myoepithelial Primary Cells	Breast
15	chr6:150571400-150572800	Genic enhancers	NHEK	skin
16	chr6:150571400-150574000	Enhancers	K562	blood
17	chr6:150571400-150579400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr6:150571600-150572600	Enhancers	Placenta	Placenta
19	chr6:150571600-150573000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr6:150571600-150573000	Enhancers	HSMM	muscle
21	chr6:150571600-150576800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr6:150571600-150577200	Enhancers	Fetal Heart	heart
23	chr6:150571800-150572600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr6:150571800-150572600	Enhancers	HUES6 Cell Line	embryonic stem cell
25	chr6:150571800-150572600	Enhancers	Hela-S3	cervix
26	chr6:150571800-150572600	Enhancers	NH-A	brain
27	chr6:150571800-150572600	Enhancers	Osteobl	bone
28	chr6:150571800-150572800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr6:150571800-150572800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr6:150571800-150572800	Enhancers	Muscle Satellite Cultured Cells	--
31	chr6:150571800-150575000	Enhancers	Right Atrium	heart
32	chr6:150572000-150572600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr6:150572000-150572600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr6:150572000-150572600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr6:150572000-150572600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
36	chr6:150572000-150572600	Enhancers	Fetal Brain Male	brain
37	chr6:150572000-150572600	Enhancers	Fetal Stomach	stomach
38	chr6:150572000-150572600	Enhancers	Lung	lung
39	chr6:150572000-150573600	Enhancers	Fetal Lung	lung
40	chr6:150572000-150574200	Weak transcription	Placenta Amnion	Placenta Amnion
41	chr6:150572000-150575600	Enhancers	Psoas Muscle	Psoas
42	chr6:150572000-150576600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
43	chr6:150572200-150573000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
44	chr6:150572200-150574000	Enhancers	Right Ventricle	heart
45	chr6:150572200-150574800	Enhancers	Fetal Intestine Small	intestine
46	chr6:150572400-150573600	Enhancers	Gastric	stomach
47	chr6:150572400-150574200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr6:150572400-150575000	Enhancers	Duodenum Mucosa	Duodenum
49	chr6:150572400-150576800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links