Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:64462700..64465411-chr6:64467022..64468859,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs1029091	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10943958	0.86[ASN][1000 genomes]
rs10944026	0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs13197043	0.98[ASN][1000 genomes]
rs13199805	0.89[ASN][1000 genomes]
rs13208965	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13216525	0.96[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs1412864	0.81[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs1412865	0.81[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs3800489	0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3800490	0.82[AFR][1000 genomes];0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4142266	0.83[ASN][1000 genomes]
rs4351235	0.82[EUR][1000 genomes]
rs4634434	0.89[ASN][1000 genomes]
rs4710256	0.84[EUR][1000 genomes]
rs4710257	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4710436	0.84[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs4710439	0.93[ASN][1000 genomes]
rs58429651	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs756274	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7762059	0.83[ASN][1000 genomes]
rs7764184	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830674	chr6:64355412-64535801	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv969307	chr6:64445020-64468321	Enhancers ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv1024367	chr6:64453493-64615908	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs13199206	LGSN	cis	Whole Blood	GTEx

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:64451800-64471400	Weak transcription	Adipose Nuclei	Adipose
2	chr6:64460400-64473000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr6:64466800-64467400	ZNF genes & repeats	Fetal Intestine Small	intestine
4	chr6:64467000-64467400	ZNF genes & repeats	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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