Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1029091	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10943958	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10944026	0.89[ASN][1000 genomes]
rs13197043	0.91[ASN][1000 genomes]
rs13199206	0.89[ASN][1000 genomes]
rs13208965	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13216525	0.83[CHB][hapmap];0.89[JPT][hapmap];0.86[ASN][1000 genomes]
rs1412864	0.84[CHB][hapmap];0.90[JPT][hapmap];0.85[ASN][1000 genomes]
rs1412865	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3800489	0.83[CHB][hapmap];0.89[JPT][hapmap];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3800490	0.83[CHB][hapmap];0.89[JPT][hapmap];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4351235	0.83[CHB][hapmap];0.89[JPT][hapmap]
rs4634434	0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4710256	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4710257	0.91[ASN][1000 genomes]
rs4710436	0.84[CHB][hapmap];0.90[JPT][hapmap];0.81[EUR][1000 genomes]
rs4710439	0.82[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs58429651	0.81[EUR][1000 genomes]
rs756274	0.83[CHB][hapmap];0.89[JPT][hapmap];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7762059	0.90[JPT][hapmap]
rs7764184	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830674	chr6:64355412-64535801	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv1022376	chr6:64386826-64445195	Strong transcription Weak transcription Flanking Active TSS Genic enhancers Enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:64422600-64441800	Weak transcription	HSMM	muscle
2	chr6:64423400-64441200	Weak transcription	HUVEC	blood vessel
3	chr6:64423400-64441800	Weak transcription	Pancreas	Pancrea
4	chr6:64423600-64441600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr6:64423600-64441800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr6:64423600-64441800	Weak transcription	NHDF-Ad	bronchial
7	chr6:64423600-64444400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
8	chr6:64424200-64450400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr6:64425200-64441600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr6:64426400-64440800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr6:64426600-64441000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr6:64435400-64441800	Weak transcription	Fetal Intestine Small	intestine
13	chr6:64436400-64444600	Weak transcription	HepG2	liver
14	chr6:64436800-64445400	Weak transcription	Primary T cells from cord blood	blood
15	chr6:64437400-64459600	Weak transcription	Aorta	Aorta
16	chr6:64437800-64445000	Weak transcription	Primary hematopoietic stem cells	blood

Quick Search: