Variant report

Variant	rs13200519
Chromosome Location	chr6:64241844-64241845
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10943869	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13191932	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs13205487	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13217662	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1744134	0.87[EUR][1000 genomes]
rs1744143	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1744153	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1779777	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2025178	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2489272	0.80[EUR][1000 genomes]
rs2622312	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2758244	0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6916092	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs71534831	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs13200519	LGSN	cis	Whole Blood	GTEx

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:64239800-64243800	Weak transcription	Skeletal Muscle Male	skeletal muscle
2	chr6:64240400-64245600	Weak transcription	Liver	Liver
3	chr6:64240400-64254000	Weak transcription	Psoas Muscle	Psoas
4	chr6:64240600-64242400	Enhancers	Hela-S3	cervix
5	chr6:64240600-64247000	Weak transcription	NHEK	skin
6	chr6:64241000-64245800	Strong transcription	HepG2	liver
7	chr6:64241200-64247000	Weak transcription	HMEC	breast
8	chr6:64241600-64247200	Weak transcription	A549	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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