Variant report

Variant	rs1320143
Chromosome Location	chr2:21212348-21212349
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10495713	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1318004	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1318006	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1320144	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1320145	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1344063	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17041662	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17041663	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17041679	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2337382	0.84[EUR][1000 genomes]
rs34059329	0.94[EUR][1000 genomes]
rs34335269	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35131127	0.93[EUR][1000 genomes]
rs35893087	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4665639	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4665642	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4665790	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs56213756	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs56327713	0.93[EUR][1000 genomes]
rs56403064	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62120841	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6707950	0.90[EUR][1000 genomes]
rs6721844	0.98[EUR][1000 genomes]
rs6722374	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6733447	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7571469	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9789416	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:21207000-21214000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr2:21207200-21214600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr2:21208600-21214200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr2:21208600-21214200	Weak transcription	Aorta	Aorta
5	chr2:21208600-21214600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr2:21209800-21212400	Weak transcription	Fetal Muscle Leg	muscle
7	chr2:21210200-21215600	Weak transcription	Colon Smooth Muscle	Colon
8	chr2:21211000-21212400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr2:21211200-21218200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr2:21211400-21214600	Weak transcription	Skeletal Muscle Female	skeletal muscle
11	chr2:21211600-21213000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr2:21211800-21213000	Enhancers	Adipose Nuclei	Adipose
13	chr2:21211800-21213600	Bivalent Enhancer	Fetal Muscle Trunk	muscle
14	chr2:21212000-21214000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr2:21212200-21213000	Weak transcription	HUES6 Cell Line	embryonic stem cell
16	chr2:21212200-21214400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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