Variant report

Variant	rs13205487
Chromosome Location	chr6:64273481-64273482
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10943869	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13191932	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13200519	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13213141	0.83[EUR][1000 genomes]
rs13217662	0.86[EUR][1000 genomes]
rs1744143	0.83[EUR][1000 genomes]
rs1744153	0.84[EUR][1000 genomes]
rs1779777	0.83[EUR][1000 genomes]
rs2025178	0.90[EUR][1000 genomes]
rs2622312	0.87[EUR][1000 genomes]
rs2758244	0.88[EUR][1000 genomes]
rs6916092	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs71534831	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7753325	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs13205487	LGSN	cis	Whole Blood	GTEx

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:64267000-64275400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr6:64270800-64274200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr6:64271200-64275400	Weak transcription	HMEC	breast
4	chr6:64271400-64275200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr6:64271400-64275800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr6:64271600-64275600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr6:64271800-64274400	Weak transcription	Stomach Mucosa	stomach
8	chr6:64273000-64273800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr6:64273000-64274000	Flanking Active TSS	Hela-S3	cervix
10	chr6:64273200-64273800	Flanking Active TSS	Liver	Liver
11	chr6:64273200-64273800	Enhancers	NHEK	skin
12	chr6:64273200-64275000	Enhancers	Skeletal Muscle Female	skeletal muscle
13	chr6:64273400-64273600	Enhancers	Skeletal Muscle Male	skeletal muscle
14	chr6:64273400-64273800	Enhancers	HepG2	liver
15	chr6:64273400-64274600	Enhancers	A549	lung
16	chr6:64273400-64276800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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