Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11752137	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11752147	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11752703	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11752932	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11753008	1.00[ASN][1000 genomes]
rs11757696	1.00[ASN][1000 genomes]
rs13193924	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13198606	1.00[ASN][1000 genomes]
rs13207323	1.00[ASN][1000 genomes]
rs13215621	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34735685	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34901813	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35111820	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35445969	1.00[ASN][1000 genomes]
rs35548444	1.00[ASN][1000 genomes]
rs35963994	1.00[ASN][1000 genomes]
rs36001360	1.00[ASN][1000 genomes]
rs36096822	1.00[ASN][1000 genomes]
rs62440052	1.00[ASN][1000 genomes]
rs71570211	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71570212	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71570213	1.00[ASN][1000 genomes]
rs73007973	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830843	chr6:150517411-150691173	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150526600-150541800	Weak transcription	Fetal Intestine Small	intestine
2	chr6:150530200-150541600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr6:150531000-150541800	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr6:150533400-150541400	Weak transcription	Fetal Brain Female	brain
5	chr6:150534000-150551000	Weak transcription	Right Atrium	heart
6	chr6:150534600-150548600	Weak transcription	Left Ventricle	heart
7	chr6:150534800-150541800	Weak transcription	Skeletal Muscle Female	skeletal muscle
8	chr6:150535600-150541400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr6:150536000-150540200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr6:150536000-150540800	Weak transcription	Fetal Heart	heart
11	chr6:150537200-150550800	Weak transcription	HMEC	breast
12	chr6:150537200-150550800	Weak transcription	NHEK	skin
13	chr6:150537800-150539800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr6:150538800-150539800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr6:150539200-150539800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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