Variant report

Variant	rs13207179
Chromosome Location	chr6:164246581-164246582
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10484518	0.88[ASN][1000 genomes]
rs13194833	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1475208	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1555228	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs16895346	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs16895356	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2207443	0.93[EUR][1000 genomes]
rs34732286	0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34811073	0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34839002	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35390637	0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35545234	0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3967298	0.84[ASN][1000 genomes]
rs4709015	0.86[ASN][1000 genomes]
rs4709018	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4709758	0.86[ASN][1000 genomes]
rs4709759	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs60028618	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs66758520	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs67424524	0.82[EUR][1000 genomes]
rs67478587	0.81[EUR][1000 genomes]
rs6908861	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6910184	0.91[EUR][1000 genomes]
rs6911532	0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6911882	0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6916946	0.81[EUR][1000 genomes]
rs6922730	0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6923240	0.86[EUR][1000 genomes]
rs6927723	0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6929655	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7341259	0.86[ASN][1000 genomes]
rs7741725	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7742329	0.86[ASN][1000 genomes]
rs7742572	0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7749407	1.00[CEU][hapmap];0.88[JPT][hapmap];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7765450	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7772777	0.88[ASN][1000 genomes]
rs9365609	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9365610	0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018860	chr6:163939347-164532579	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv538526	chr6:163939347-164532579	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv1026707	chr6:164188210-164749206	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv538527	chr6:164188210-164749206	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:164230400-164249200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr6:164236400-164249000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr6:164243400-164247600	Weak transcription	Fetal Muscle Leg	muscle
4	chr6:164243400-164249000	Weak transcription	Fetal Muscle Trunk	muscle
5	chr6:164244000-164247800	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr6:164246000-164246800	Enhancers	Brain Germinal Matrix	brain
7	chr6:164246200-164246600	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr6:164246400-164246600	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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