Variant report

Variant	rs13207200
Chromosome Location	chr6:81384818-81384819
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10455372	0.90[ASN][1000 genomes]
rs12213114	0.88[EUR][1000 genomes]
rs12213393	0.90[EUR][1000 genomes]
rs12213889	0.90[ASN][1000 genomes]
rs12214028	0.90[ASN][1000 genomes]
rs12214145	0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs13193169	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1454449	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1454453	0.90[ASN][1000 genomes]
rs16892045	0.81[ASN][1000 genomes]
rs17720061	0.90[EUR][1000 genomes]
rs2027318	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2039768	0.90[EUR][1000 genomes]
rs34538775	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35802620	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs36018197	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4380719	0.86[ASN][1000 genomes]
rs6935953	0.88[EUR][1000 genomes]
rs9294179	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9341821	0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs9341825	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9344028	0.88[ASN][1000 genomes]
rs9344033	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9344034	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9344035	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9344037	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9352848	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9352849	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9359425	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9359427	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9359429	0.88[EUR][1000 genomes]
rs9361632	0.82[ASN][1000 genomes]
rs9361634	0.80[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs9361636	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9361637	0.88[ASN][1000 genomes]
rs9361638	0.88[ASN][1000 genomes]
rs9361644	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9361651	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531333	chr6:81042427-81836484	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv1019670	chr6:81086504-81569984	ZNF genes & repeats Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	nsv1020533	chr6:81288890-81406533	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv538340	chr6:81288890-81406533	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv604085	chr6:81297890-81439973	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv886315	chr6:81352515-81946866	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv1031262	chr6:81372977-81399620	Active TSS Enhancers ZNF genes & repeats Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:81364600-81386800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr6:81384800-81385000	Enhancers	Pancreatic Islets	Pancreatic Islet

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