Variant report

Variant	rs13215098
Chromosome Location	chr6:13103162-13103163
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:13101650..13103683-chr6:13109601..13111424,2	K562	blood:

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs11751831	0.93[CEU][hapmap];0.82[CHB][hapmap];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11753838	0.93[CEU][hapmap];0.82[CHB][hapmap];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11754531	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11755240	0.80[CEU][hapmap];0.82[CHB][hapmap];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11755663	0.80[CEU][hapmap]
rs11757001	1.00[CEU][hapmap];0.82[CHB][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17323391	0.81[CEU][hapmap]
rs17375084	1.00[CEU][hapmap];0.82[CHB][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1937772	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1937773	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1937774	1.00[CEU][hapmap];0.82[CHB][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs35218818	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs35654535	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4130157	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4131857	0.87[CEU][hapmap]
rs4273675	0.86[AMR][1000 genomes]
rs4273676	1.00[CEU][hapmap];0.82[CHB][hapmap];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4329096	1.00[CEU][hapmap];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4389765	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4537139	1.00[CEU][hapmap];0.82[CHB][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4715065	0.94[CEU][hapmap]
rs4715077	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4715088	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4715100	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4715101	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6458624	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6907651	0.93[CEU][hapmap]
rs6912487	1.00[CEU][hapmap]
rs6918053	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6920793	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7755806	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7757631	0.82[CHB][hapmap]
rs7757960	0.82[CHB][hapmap]
rs7762659	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7762786	0.94[CEU][hapmap];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7775760	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9349440	1.00[CEU][hapmap]
rs9367308	0.81[CEU][hapmap]
rs9369762	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3521000	chr6:12561306-13128519	Enhancers Weak transcription Bivalent/Poised TSS Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv3521001	chr6:12561306-13128519	Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv817350	chr6:12922859-13137655	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv600992	chr6:12961922-13218549	Weak transcription Enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:13080000-13105200	Weak transcription	Right Atrium	heart
2	chr6:13096200-13103200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr6:13097200-13106600	Weak transcription	Primary hematopoietic stem cells	blood
4	chr6:13099200-13114200	Weak transcription	Aorta	Aorta
5	chr6:13099800-13105800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
6	chr6:13099800-13105800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr6:13099800-13105800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr6:13101400-13103600	Enhancers	Breast Myoepithelial Primary Cells	Breast
9	chr6:13101400-13103600	Enhancers	Brain Anterior Caudate	brain
10	chr6:13101800-13103400	Enhancers	HUES48 Cell Line	embryonic stem cell
11	chr6:13101800-13114200	Weak transcription	Lung	lung
12	chr6:13102000-13103600	Enhancers	iPS-15b Cell Line	embryonic stem cell
13	chr6:13102000-13103600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
14	chr6:13102000-13103600	Enhancers	Fetal Brain Female	brain
15	chr6:13102200-13103400	Enhancers	H1 Cell Line	embryonic stem cell
16	chr6:13102200-13103400	Enhancers	iPS-18 Cell Line	embryonic stem cell
17	chr6:13102200-13104000	Weak transcription	Left Ventricle	heart
18	chr6:13102200-13104200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
19	chr6:13102600-13103400	Enhancers	iPS-20b Cell Line	embryonic stem cell
20	chr6:13102600-13103600	Enhancers	HUES64 Cell Line	embryonic stem cell
21	chr6:13102600-13107400	Weak transcription	Brain Cingulate Gyrus	brain
22	chr6:13103000-13103200	Enhancers	Cortex derived primary cultured neurospheres	brain
23	chr6:13103000-13103200	Enhancers	Brain Angular Gyrus	brain
24	chr6:13103000-13103200	Enhancers	Pancreas	Pancrea
25	chr6:13103000-13103400	Enhancers	HUES6 Cell Line	embryonic stem cell
26	chr6:13103000-13103400	Enhancers	Fetal Heart	heart
27	chr6:13103000-13105400	Weak transcription	Right Ventricle	heart

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