Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:64308263..64309124-chr6:64469501..64470138,2	MCF-7	breast:
2	chr6:64281925..64283848-chr6:64468333..64470630,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000112245	Chromatin interaction
ENSG00000266680	Chromatin interaction

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs1029091	0.88[ASN][1000 genomes]
rs10943958	0.83[ASN][1000 genomes]
rs10944026	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13197043	0.91[ASN][1000 genomes]
rs13199206	0.96[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs13199805	0.86[ASN][1000 genomes]
rs13208965	0.81[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs1412864	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs1977622	0.80[ASN][1000 genomes]
rs2627797	0.81[YRI][hapmap]
rs3800489	0.91[ASW][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.91[MEX][hapmap];0.89[MKK][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs3800490	0.91[ASW][hapmap];0.80[CEU][hapmap];1.00[CHB][hapmap];0.87[CHD][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];0.91[MEX][hapmap];0.91[MKK][hapmap];1.00[YRI][hapmap]
rs4142266	0.87[ASN][1000 genomes]
rs4351235	0.80[CEU][hapmap];0.94[CHB][hapmap];0.87[CHD][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap]
rs4634434	0.86[ASN][1000 genomes]
rs4710257	0.93[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs4710436	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[ASN][1000 genomes]
rs4710439	0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs58429651	0.85[ASN][1000 genomes]
rs756274	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs7762059	0.86[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs7764184	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830674	chr6:64355412-64535801	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv1024367	chr6:64453493-64615908	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:64451800-64471400	Weak transcription	Adipose Nuclei	Adipose
2	chr6:64460400-64473000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr6:64467200-64474400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr6:64468200-64474000	Weak transcription	HepG2	liver

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