Variant report

Variant	rs1321701
Chromosome Location	chr11:35272605-35272606
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:35260075..35262709-chr11:35271623..35274355,2	K562	blood:
2	chr11:35262350..35264574-chr11:35271788..35273676,2	MCF-7	breast:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs12287327	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12294045	0.88[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.84[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs2281634	0.94[TSI][hapmap]
rs3888947	0.87[TSI][hapmap]
rs58221965	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7108747	1.00[EUR][1000 genomes]
rs7944233	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045837	chr11:34893992-35395190	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
2	nsv541004	chr11:35122694-35297414	Strong transcription Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:35264400-35281800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr11:35264800-35281800	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr11:35265800-35305800	Weak transcription	HepG2	liver
4	chr11:35267800-35276200	Weak transcription	Right Atrium	heart
5	chr11:35268600-35274400	Weak transcription	Osteobl	bone
6	chr11:35269000-35274200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr11:35269400-35281800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr11:35270200-35278200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
9	chr11:35270200-35292600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
10	chr11:35270400-35272800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr11:35270400-35273800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr11:35270400-35273800	Weak transcription	NHLF	lung
13	chr11:35270400-35274000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr11:35270400-35274000	Weak transcription	NHDF-Ad	bronchial
15	chr11:35270400-35274600	Weak transcription	Rectal Smooth Muscle	rectum
16	chr11:35270400-35274800	Strong transcription	Cortex derived primary cultured neurospheres	brain
17	chr11:35270400-35275000	Weak transcription	Colon Smooth Muscle	Colon
18	chr11:35270400-35277600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
19	chr11:35270400-35277600	Weak transcription	Brain Anterior Caudate	brain
20	chr11:35270400-35285400	Weak transcription	Brain Germinal Matrix	brain
21	chr11:35270400-35296400	Weak transcription	Brain Cingulate Gyrus	brain
22	chr11:35270400-35307000	Weak transcription	Fetal Brain Male	brain
23	chr11:35270600-35275800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
24	chr11:35270600-35277600	Weak transcription	Primary T helper cells PMA-I stimulated	--
25	chr11:35270600-35277600	Weak transcription	Primary T helper cells fromperipheralblood	blood
26	chr11:35270600-35278000	Weak transcription	Primary T cells fromperipheralblood	blood
27	chr11:35270600-35278000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
28	chr11:35270600-35281000	Weak transcription	Fetal Brain Female	brain
29	chr11:35270600-35284400	Weak transcription	Brain Hippocampus Middle	brain
30	chr11:35271200-35277400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
31	chr11:35271200-35286400	Weak transcription	Pancreas	Pancrea
32	chr11:35271600-35275800	Weak transcription	Aorta	Aorta
33	chr11:35271800-35272800	Enhancers	Monocytes-CD14+_RO01746	blood
34	chr11:35272400-35274200	Weak transcription	Stomach Smooth Muscle	stomach
35	chr11:35272600-35278000	Weak transcription	Primary monocytes fromperipheralblood	blood

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