Variant report

Variant	rs13220463
Chromosome Location	chr6:13145043-13145044
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:13134956..13137287-chr6:13143734..13146232,2	K562	blood:

Extended variants
information (count: 25 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10485363	0.86[CEU][hapmap];1.00[TSI][hapmap];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11751831	0.80[CEU][hapmap]
rs11755663	0.80[ASW][hapmap];0.93[CEU][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];0.96[TSI][hapmap];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11966433	0.88[CEU][hapmap];0.84[EUR][1000 genomes]
rs1223532	0.82[EUR][1000 genomes]
rs1223535	0.81[CEU][hapmap];0.81[EUR][1000 genomes]
rs13192887	1.00[CEU][hapmap];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16873638	0.81[CEU][hapmap];0.83[EUR][1000 genomes]
rs17323391	0.93[CEU][hapmap];1.00[JPT][hapmap];0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2183072	1.00[CEU][hapmap];1.00[JPT][hapmap];0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2327633	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34603187	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4131857	1.00[JPT][hapmap]
rs4329096	0.80[CEU][hapmap]
rs4331981	1.00[JPT][hapmap]
rs4715065	0.80[CEU][hapmap]
rs62385529	0.83[EUR][1000 genomes]
rs6907388	1.00[CEU][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6939931	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71562464	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs746593	0.81[CEU][hapmap];0.81[EUR][1000 genomes]
rs7762786	0.80[CEU][hapmap]
rs7775901	1.00[JPT][hapmap]
rs9473086	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv600992	chr6:12961922-13218549	Weak transcription Enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs13220463	C6orf105	cis	parietal	SCAN

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:13132800-13153000	Weak transcription	Aorta	Aorta
2	chr6:13140400-13146000	Weak transcription	Brain Substantia Nigra	brain
3	chr6:13140400-13147800	Weak transcription	Fetal Kidney	kidney
4	chr6:13142200-13145600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
5	chr6:13142400-13145400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr6:13142400-13145400	Weak transcription	Brain Anterior Caudate	brain
7	chr6:13142400-13145600	Weak transcription	Primary hematopoietic stem cells	blood
8	chr6:13142400-13159400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr6:13142600-13145200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr6:13144000-13149000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr6:13144600-13148800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr6:13144600-13149000	Weak transcription	HUES64 Cell Line	embryonic stem cell
13	chr6:13144600-13149200	Weak transcription	HUES48 Cell Line	embryonic stem cell
14	chr6:13144800-13149200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
15	chr6:13144800-13149400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr6:13145000-13145600	Weak transcription	Pancreas	Pancrea

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links