Variant report

Variant	rs13223313
Chromosome Location	chr7:147519010-147519011
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs11980029	0.85[JPT][hapmap]
rs12532879	0.90[EUR][1000 genomes]
rs12533758	0.85[JPT][hapmap]
rs12536467	0.89[ASW][hapmap]
rs12539201	0.80[YRI][hapmap]
rs12540860	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap]
rs12540934	0.83[CHB][hapmap]
rs13225365	1.00[ASW][hapmap];1.00[CEU][hapmap];0.83[CHB][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs13233606	1.00[CEU][hapmap];0.83[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13238480	0.92[CHB][hapmap];0.92[JPT][hapmap];0.94[ASN][1000 genomes]
rs13243566	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13247212	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1404732	1.00[CEU][hapmap];1.00[TSI][hapmap];0.92[EUR][1000 genomes]
rs17825182	0.85[CHB][hapmap]
rs2011815	0.89[ASW][hapmap]
rs2215798	0.85[JPT][hapmap]
rs2538973	0.85[JPT][hapmap]
rs2710101	0.85[JPT][hapmap]
rs34103397	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62474778	0.80[EUR][1000 genomes]
rs62481195	0.82[ASN][1000 genomes]
rs62481196	0.82[ASN][1000 genomes]
rs62482322	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6464841	1.00[CEU][hapmap]
rs6464842	0.96[CHD][hapmap];0.92[JPT][hapmap];0.84[ASN][1000 genomes]
rs7781495	0.94[ASN][1000 genomes]
rs7785374	1.00[CEU][hapmap];1.00[TSI][hapmap]
rs7785839	1.00[CEU][hapmap];1.00[TSI][hapmap]
rs7788047	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933973	chr7:147438206-147549993	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	n/a
2	nsv889397	chr7:147471710-147585819	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	n/a
3	nsv465193	chr7:147512619-147583680	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	n/a
4	nsv608965	chr7:147512619-147583680	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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