Variant report

Variant	rs13223644
Chromosome Location	chr7:137786038-137786039
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10226024	0.82[EUR][1000 genomes]
rs10265064	0.81[EUR][1000 genomes]
rs10278929	0.84[EUR][1000 genomes]
rs10280600	0.81[EUR][1000 genomes]
rs10280818	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10954601	0.81[EUR][1000 genomes]
rs13243602	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2035648	0.82[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs2035736	0.82[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs2352140	0.84[EUR][1000 genomes]
rs28533201	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs28609414	0.83[EUR][1000 genomes]
rs34315519	0.82[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs4732288	0.83[EUR][1000 genomes]
rs57020142	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6467734	0.81[EUR][1000 genomes]
rs6467736	0.83[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs6943498	0.81[EUR][1000 genomes]
rs8180809	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv518070	chr7:137534627-137808839	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	nsv831151	chr7:137711447-137865471	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
3	esv34048	chr7:137724092-138213119	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:137776600-137790000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr7:137782800-137802400	Strong transcription	Liver	Liver
3	chr7:137785000-137795800	Weak transcription	HepG2	liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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