Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11561915	0.85[LWK][hapmap];0.82[YRI][hapmap]
rs11561916	1.00[YRI][hapmap]
rs11980029	0.85[JPT][hapmap]
rs12533758	0.85[JPT][hapmap];1.00[YRI][hapmap];0.81[ASN][1000 genomes]
rs12536467	0.88[ASW][hapmap]
rs12540860	1.00[CEU][hapmap];0.83[CHB][hapmap];0.88[JPT][hapmap]
rs12540934	0.83[CHB][hapmap]
rs13223313	1.00[ASW][hapmap];1.00[CEU][hapmap];0.83[CHB][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs13233606	1.00[CEU][hapmap];0.83[CHB][hapmap];1.00[JPT][hapmap]
rs13238480	0.92[JPT][hapmap]
rs13243566	1.00[CEU][hapmap];0.83[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap]
rs13247212	0.82[EUR][1000 genomes]
rs1404732	1.00[CEU][hapmap];1.00[TSI][hapmap]
rs17237331	1.00[YRI][hapmap]
rs2011815	0.88[ASW][hapmap]
rs2215798	0.85[JPT][hapmap]
rs2538973	0.85[JPT][hapmap]
rs2710101	0.85[JPT][hapmap]
rs34103397	0.82[EUR][1000 genomes]
rs62474778	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6464841	1.00[CEU][hapmap]
rs6464842	0.92[JPT][hapmap]
rs7785374	1.00[CEU][hapmap];1.00[TSI][hapmap]
rs7785839	1.00[CEU][hapmap];1.00[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023913	chr7:147521075-147806318	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1026058	chr7:147521109-147783042	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv539179	chr7:147521109-147783042	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv934002	chr7:147521110-147807705	Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1017610	chr7:147523752-147806427	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:147607000-147612400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr7:147607200-147612600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr7:147608600-147612400	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr7:147612000-147613600	Enhancers	Adipose Nuclei	Adipose
5	chr7:147612200-147613000	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr7:147612200-147613000	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr7:147612200-147613000	Enhancers	iPS-18 Cell Line	embryonic stem cell

Quick Search: