Variant report

Variant	rs13225632
Chromosome Location	chr7:104544016-104544017
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:104538120..104539744-chr7:104542402..104544424,2	K562	blood:
2	chr7:104543746..104545822-chr7:104551273..104553453,2	K562	blood:

Variant related genes	Relation type
ENSG00000243352	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10226456	0.97[AMR][1000 genomes];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10235696	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10236552	0.97[AMR][1000 genomes];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10237433	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10238498	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10247944	0.91[ASN][1000 genomes]
rs10253341	0.81[ASN][1000 genomes]
rs10257360	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10266362	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10273609	0.97[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs10274240	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10280365	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10281485	0.97[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10953457	0.94[ASN][1000 genomes]
rs12534673	0.90[ASN][1000 genomes]
rs12537945	0.85[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs12670275	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12672211	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2285533	0.92[AMR][1000 genomes];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs28478615	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs28546781	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs28587189	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs34083033	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs34171467	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs35756879	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs35894637	0.81[ASN][1000 genomes]
rs35988800	0.97[AMR][1000 genomes];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6949139	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7779117	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831086	chr7:104422503-104596766	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:104535000-104557000	Weak transcription	Fetal Kidney	kidney
2	chr7:104537200-104545200	Weak transcription	Fetal Intestine Large	intestine
3	chr7:104538200-104546600	Weak transcription	Duodenum Mucosa	Duodenum
4	chr7:104541800-104546000	Strong transcription	Fetal Intestine Small	intestine
5	chr7:104542400-104552400	Weak transcription	Pancreas	Pancrea
6	chr7:104543400-104545200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr7:104544000-104546200	Weak transcription	Right Atrium	heart

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