Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:138126108..138128101-chr7:138131992..138134050,2	K562	blood:
2	chr7:138132498..138134327-chr7:138141353..138142871,2	K562	blood:

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10246196	0.82[CHB][hapmap];0.80[JPT][hapmap];0.82[ASN][1000 genomes]
rs10274356	0.85[ASN][1000 genomes]
rs12669629	0.96[ASN][1000 genomes]
rs2029814	0.85[JPT][hapmap]
rs2029815	0.80[JPT][hapmap]
rs2353349	0.82[ASN][1000 genomes]
rs28849519	0.82[ASN][1000 genomes]
rs34341136	0.82[ASN][1000 genomes]
rs34415266	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3757383	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs56046212	0.82[ASN][1000 genomes]
rs56321501	0.82[ASN][1000 genomes]
rs60656053	0.82[ASN][1000 genomes]
rs60673935	0.80[ASN][1000 genomes]
rs62487579	0.81[ASN][1000 genomes]
rs62487580	0.81[ASN][1000 genomes]
rs62487581	0.81[ASN][1000 genomes]
rs62487582	0.81[ASN][1000 genomes]
rs62487583	0.82[ASN][1000 genomes]
rs6467773	0.88[ASN][1000 genomes]
rs6953166	0.82[ASN][1000 genomes]
rs6960172	0.82[ASN][1000 genomes]
rs752158	0.89[ASN][1000 genomes]
rs7786347	0.94[ASW][hapmap];1.00[CEU][hapmap];0.91[CHB][hapmap];0.93[CHD][hapmap];0.87[GIH][hapmap];0.89[JPT][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7798391	0.96[CEU][hapmap];0.83[JPT][hapmap];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34048	chr7:137724092-138213119	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv831153	chr7:138078179-138265648	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
3	nsv970583	chr7:138125511-138137818	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs13229601	ADCK2	cis	cerebellum	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:138132600-138134200	Weak transcription	K562	blood

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