Variant report

Variant	rs13230447
Chromosome Location	chr7:104291995-104291996
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10275118	1.00[CEU][hapmap]
rs13224644	1.00[CEU][hapmap]
rs13227694	1.00[CEU][hapmap];1.00[AFR][1000 genomes]
rs13232800	1.00[CEU][hapmap];1.00[AFR][1000 genomes]
rs13235175	1.00[CEU][hapmap]
rs13237905	1.00[CEU][hapmap];1.00[AFR][1000 genomes]
rs17777379	1.00[CEU][hapmap]
rs34244898	1.00[AFR][1000 genomes]
rs34250422	1.00[AFR][1000 genomes]
rs34560470	1.00[AFR][1000 genomes]
rs35068515	1.00[AFR][1000 genomes]
rs4406342	1.00[CEU][hapmap]
rs6944043	1.00[CEU][hapmap]
rs6957023	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024532	chr7:104281393-104299847	Enhancers Bivalent Enhancer Active TSS Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:104290000-104292800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr7:104290400-104295000	Enhancers	Colon Smooth Muscle	Colon
3	chr7:104290400-104295600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr7:104290800-104293200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr7:104291000-104295600	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr7:104291200-104292400	Enhancers	Brain Anterior Caudate	brain
7	chr7:104291200-104292400	Enhancers	Brain Substantia Nigra	brain
8	chr7:104291400-104292000	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr7:104291400-104292000	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr7:104291400-104292000	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
11	chr7:104291400-104292000	Enhancers	Brain Germinal Matrix	brain
12	chr7:104291400-104292000	Flanking Active TSS	Brain Hippocampus Middle	brain
13	chr7:104291400-104292400	Enhancers	Brain Inferior Temporal Lobe	brain
14	chr7:104291600-104292200	Enhancers	Fetal Brain Male	brain
15	chr7:104291800-104292000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr7:104291800-104292000	Enhancers	Right Atrium	heart
17	chr7:104291800-104292600	Enhancers	Brain Cingulate Gyrus	brain
18	chr7:104291800-104293600	Enhancers	Pancreas	Pancrea

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links