Variant report

Variant	rs13233606
Chromosome Location	chr7:147537678-147537679
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs11980029	0.83[CHB][hapmap];0.84[JPT][hapmap]
rs12532879	0.90[EUR][1000 genomes]
rs12533758	0.84[JPT][hapmap]
rs12536467	0.83[CHB][hapmap]
rs12539201	0.83[CHB][hapmap]
rs12540860	1.00[CEU][hapmap];0.83[CHB][hapmap];0.88[JPT][hapmap];0.87[YRI][hapmap]
rs12540934	1.00[CHB][hapmap]
rs13223313	1.00[CEU][hapmap];0.83[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap]
rs13225365	1.00[CEU][hapmap];0.83[CHB][hapmap];1.00[JPT][hapmap]
rs13238480	0.92[JPT][hapmap];0.88[ASN][1000 genomes]
rs13243566	1.00[CEU][hapmap];0.83[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13247212	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1404732	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs2011815	0.82[CHB][hapmap]
rs2215798	0.83[CHB][hapmap];0.84[JPT][hapmap]
rs2538973	0.84[JPT][hapmap]
rs2710101	0.83[CHB][hapmap];0.84[JPT][hapmap]
rs34103397	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34652342	0.81[ASN][1000 genomes]
rs62474778	0.80[EUR][1000 genomes]
rs62481195	0.90[ASN][1000 genomes]
rs62481196	0.90[ASN][1000 genomes]
rs62482322	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6464841	1.00[CEU][hapmap]
rs6464842	0.91[CHB][hapmap];0.92[JPT][hapmap];0.92[ASN][1000 genomes]
rs7781495	0.88[ASN][1000 genomes]
rs7785374	1.00[CEU][hapmap];0.81[CHB][hapmap]
rs7785839	1.00[CEU][hapmap];0.81[CHB][hapmap]
rs7788047	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933973	chr7:147438206-147549993	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	n/a
2	nsv889397	chr7:147471710-147585819	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	n/a
3	nsv465193	chr7:147512619-147583680	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	n/a
4	nsv608965	chr7:147512619-147583680	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	n/a
5	nsv1023913	chr7:147521075-147806318	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv1026058	chr7:147521109-147783042	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv539179	chr7:147521109-147783042	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	nsv934002	chr7:147521110-147807705	Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
9	nsv1017610	chr7:147523752-147806427	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:147536800-147541000	Weak transcription	Primary monocytes fromperipheralblood	blood
2	chr7:147537000-147540800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood

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