Variant report

Variant	rs1323563
Chromosome Location	chr13:76434377-76434378
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:76386406..76389041-chr13:76432929..76434756,2	MCF-7	breast:

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11617914	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1323570	0.80[CEU][hapmap];0.80[EUR][1000 genomes]
rs1407963	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1407965	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1407966	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs579540	0.80[EUR][1000 genomes]
rs7335875	0.94[GIH][hapmap]
rs9318379	0.96[ASN][1000 genomes]
rs9573672	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9593134	0.83[GIH][hapmap]
rs9670668	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832646	chr13:76300428-76483102	Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	esv2758333	chr13:76321610-76542003	Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	esv2759950	chr13:76321610-76542003	Weak transcription Enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
4	nsv832649	chr13:76424872-76657891	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:76394400-76435800	Weak transcription	Colon Smooth Muscle	Colon
2	chr13:76396400-76436800	Weak transcription	Fetal Brain Male	brain
3	chr13:76406000-76436800	Strong transcription	Muscle Satellite Cultured Cells	--
4	chr13:76406600-76435000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr13:76408400-76435000	Strong transcription	HSMMtube	muscle
6	chr13:76408400-76435200	Strong transcription	NH-A	brain
7	chr13:76413200-76436800	Strong transcription	NHDF-Ad	bronchial
8	chr13:76413800-76437600	Strong transcription	HSMM	muscle
9	chr13:76414400-76435200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr13:76416400-76434600	Weak transcription	Spleen	Spleen
11	chr13:76417400-76434600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr13:76417400-76443800	Weak transcription	Fetal Brain Female	brain
13	chr13:76417600-76436800	Weak transcription	Psoas Muscle	Psoas
14	chr13:76417600-76437800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr13:76417600-76444600	Weak transcription	HMEC	breast
16	chr13:76417800-76438800	Weak transcription	A549	lung
17	chr13:76424400-76444200	Weak transcription	Fetal Lung	lung
18	chr13:76427400-76440800	Weak transcription	Ovary	ovary
19	chr13:76428000-76435200	Weak transcription	HUES48 Cell Line	embryonic stem cell
20	chr13:76428000-76444600	Weak transcription	Fetal Kidney	kidney
21	chr13:76428000-76444800	Weak transcription	Esophagus	oesophagus
22	chr13:76428200-76437400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr13:76428200-76444400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr13:76428400-76444600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr13:76428400-76444600	Weak transcription	Fetal Heart	heart
26	chr13:76429000-76434800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
27	chr13:76429600-76444600	Weak transcription	Fetal Muscle Trunk	muscle
28	chr13:76429800-76435200	Weak transcription	Placenta	Placenta
29	chr13:76431000-76434800	Strong transcription	Osteobl	bone
30	chr13:76431000-76435800	Weak transcription	Fetal Stomach	stomach
31	chr13:76431000-76435800	Weak transcription	Fetal Thymus	thymus
32	chr13:76431000-76436800	Weak transcription	Gastric	stomach
33	chr13:76431000-76438400	Weak transcription	Sigmoid Colon	Sigmoid Colon
34	chr13:76431000-76444600	Weak transcription	Aorta	Aorta
35	chr13:76431200-76436600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr13:76431200-76436600	Weak transcription	Lung	lung
37	chr13:76431600-76435200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr13:76431600-76436400	Weak transcription	Colonic Mucosa	Colon
39	chr13:76431600-76437600	Weak transcription	Duodenum Mucosa	Duodenum
40	chr13:76431600-76444600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
41	chr13:76431800-76434400	Weak transcription	Placenta Amnion	Placenta Amnion
42	chr13:76431800-76436800	Weak transcription	Thymus	Thymus
43	chr13:76432000-76444600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
44	chr13:76432200-76434600	Weak transcription	Pancreas	Pancrea
45	chr13:76432200-76435000	Weak transcription	Rectal Mucosa Donor 29	rectum
46	chr13:76432200-76436600	Weak transcription	Rectal Mucosa Donor 31	rectum
47	chr13:76432200-76438000	Weak transcription	Left Ventricle	heart
48	chr13:76432200-76438800	Weak transcription	HepG2	liver
49	chr13:76432200-76443600	Weak transcription	Primary T cells from cord blood	blood
50	chr13:76432200-76444200	Weak transcription	GM12878-XiMat	blood

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