Variant report

Variant	rs13239262
Chromosome Location	chr11:28240420-28240421
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1821840	0.90[AFR][1000 genomes]
rs2340580	0.81[AFR][1000 genomes]
rs34668393	0.90[AFR][1000 genomes]
rs35732386	0.85[AFR][1000 genomes]
rs36199280	0.90[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs36200549	0.90[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs62459428	0.84[AFR][1000 genomes]
rs62459452	0.84[AFR][1000 genomes]
rs62459490	0.81[AFR][1000 genomes]
rs62463290	0.81[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs8185631	0.90[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv897150	chr11:28110210-28302792	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:28195600-28249000	Weak transcription	HSMM	muscle
2	chr11:28212800-28244000	Weak transcription	Left Ventricle	heart
3	chr11:28214000-28256800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr11:28231200-28244000	Weak transcription	Lung	lung
5	chr11:28231200-28249000	Weak transcription	A549	lung
6	chr11:28231800-28263200	Weak transcription	Ovary	ovary
7	chr11:28232000-28243600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr11:28232200-28268600	Weak transcription	Duodenum Mucosa	Duodenum
9	chr11:28232400-28250800	Weak transcription	Primary T helper cells fromperipheralblood	blood
10	chr11:28233800-28241000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
11	chr11:28234200-28249200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr11:28234400-28245000	Weak transcription	Rectal Mucosa Donor 31	rectum
13	chr11:28234400-28248800	Weak transcription	Muscle Satellite Cultured Cells	--
14	chr11:28234400-28266600	Weak transcription	Primary B cells from cord blood	blood
15	chr11:28234600-28256000	Weak transcription	Primary T cells fromperipheralblood	blood
16	chr11:28234800-28243800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr11:28236000-28244000	Weak transcription	Gastric	stomach
18	chr11:28237600-28243200	Weak transcription	Aorta	Aorta
19	chr11:28237600-28244600	Weak transcription	Pancreas	Pancrea
20	chr11:28237600-28248600	Weak transcription	Sigmoid Colon	Sigmoid Colon
21	chr11:28237600-28250800	Weak transcription	Primary T cells from cord blood	blood
22	chr11:28239600-28245200	Weak transcription	Fetal Muscle Trunk	muscle
23	chr11:28239800-28249600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr11:28239800-28256600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
25	chr11:28240400-28243000	Weak transcription	Primary hematopoietic stem cells	blood

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