Variant report

Variant	rs13240736
Chromosome Location	chr7:137713410-137713411
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10954599	0.94[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs11977965	0.87[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs11980668	0.95[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs2113439	0.96[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2352137	0.93[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34970488	0.83[AMR][1000 genomes]
rs4732282	0.81[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs4732283	0.89[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs56083840	0.83[AMR][1000 genomes]
rs6944019	0.95[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs6969540	0.94[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs713470	0.86[ASN][1000 genomes]
rs730865	0.84[AMR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv518070	chr7:137534627-137808839	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	nsv831151	chr7:137711447-137865471	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:137708200-137715000	Enhancers	Primary B cells from cord blood	blood
2	chr7:137708400-137714000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr7:137711000-137715200	Enhancers	Primary B cells from peripheral blood	blood
4	chr7:137711600-137714000	Enhancers	Primary hematopoietic stem cells	blood
5	chr7:137711600-137714200	Enhancers	iPS-20b Cell Line	embryonic stem cell
6	chr7:137711800-137713800	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr7:137711800-137714000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr7:137711800-137714000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr7:137712000-137714000	Enhancers	Primary hematopoietic stem cells short term culture	blood
10	chr7:137712200-137713800	Enhancers	Primary monocytes fromperipheralblood	blood
11	chr7:137712200-137714200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr7:137712600-137714200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
13	chr7:137712800-137713800	Weak transcription	HUES48 Cell Line	embryonic stem cell
14	chr7:137712800-137713800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr7:137712800-137714800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
16	chr7:137712800-137717600	Weak transcription	HUES64 Cell Line	embryonic stem cell
17	chr7:137713400-137713800	Enhancers	GM12878-XiMat	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links