Variant report

Variant	rs13241079
Chromosome Location	chr7:101517108-101517109
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr7:101505683..101508584-chr7:101516146..101519244,4	K562	blood:
2	chr7:101499241..101502568-chr7:101516152..101518737,4	K562	blood:
3	chr7:101500513..101502568-chr7:101516152..101518658,2	K562	blood:
4	chr7:101514955..101516644-chr7:101516805..101518338,2	K562	blood:
5	chr7:101505683..101508254-chr7:101516347..101519089,2	K562	blood:
6	chr7:100487416..100489348-chr7:101516491..101519278,2	MCF-7	breast:
7	chr7:101514433..101518580-chr7:101582721..101585796,4	MCF-7	breast:
8	chr7:101512083..101520283-chr7:101521327..101527237,12	K562	blood:
9	chr7:101512598..101514582-chr7:101516207..101518095,2	K562	blood:

No data

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10081174	0.81[ASN][1000 genomes]
rs10226289	0.82[ASN][1000 genomes]
rs10227516	0.83[AMR][1000 genomes]
rs10241905	0.81[ASN][1000 genomes]
rs10242019	0.90[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs10255356	0.82[ASN][1000 genomes]
rs10256232	0.82[ASN][1000 genomes]
rs10259103	0.81[ASN][1000 genomes]
rs10259964	0.82[ASN][1000 genomes]
rs10261524	0.82[ASN][1000 genomes]
rs10264844	0.82[ASN][1000 genomes]
rs10264855	0.82[ASN][1000 genomes]
rs10264866	0.82[ASN][1000 genomes]
rs10271171	0.82[ASN][1000 genomes]
rs10271610	0.81[ASN][1000 genomes]
rs10271838	0.81[ASN][1000 genomes]
rs10275899	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10279763	0.81[ASN][1000 genomes]
rs12532535	0.84[AMR][1000 genomes]
rs12534641	0.81[ASN][1000 genomes]
rs12539310	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13227531	0.82[ASN][1000 genomes]
rs13229243	0.81[ASN][1000 genomes]
rs13236072	0.84[AMR][1000 genomes]
rs2410921	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28409703	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34750675	0.86[AMR][1000 genomes]
rs4729756	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4729757	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4729758	0.85[AFR][1000 genomes]
rs4729759	0.82[ASN][1000 genomes]
rs4729760	0.81[ASN][1000 genomes]
rs55824493	0.81[ASN][1000 genomes]
rs60656667	0.84[AMR][1000 genomes]
rs72603509	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72603510	0.86[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs72603511	0.81[ASN][1000 genomes]
rs72603512	0.84[AMR][1000 genomes]
rs9656073	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024319	chr7:101368299-101668159	Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
2	nsv539047	chr7:101368299-101668159	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
3	nsv1020372	chr7:101420819-101718950	Enhancers Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:101 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:101501000-101517600	Weak transcription	Duodenum Smooth Muscle	Duodenum
2	chr7:101501000-101523600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
3	chr7:101501000-101525000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr7:101503400-101517400	Weak transcription	Primary B cells from cord blood	blood
5	chr7:101504800-101518200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
6	chr7:101509000-101522600	Weak transcription	Primary T cells from cord blood	blood
7	chr7:101509200-101517200	Weak transcription	Dnd41	blood
8	chr7:101509200-101517200	Weak transcription	Monocytes-CD14+_RO01746	blood
9	chr7:101511600-101519000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr7:101511600-101523400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
11	chr7:101511800-101523600	Weak transcription	Primary B cells from peripheral blood	blood
12	chr7:101512200-101524000	Weak transcription	NHLF	lung
13	chr7:101513200-101523600	Weak transcription	Primary T cells fromperipheralblood	blood
14	chr7:101513400-101517400	Weak transcription	Fetal Brain Female	brain
15	chr7:101513400-101517800	Weak transcription	Right Atrium	heart
16	chr7:101513400-101523400	Weak transcription	Small Intestine	intestine
17	chr7:101513600-101517400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr7:101513600-101522600	Weak transcription	Liver	Liver
19	chr7:101513600-101525200	Weak transcription	Spleen	Spleen
20	chr7:101513800-101517200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr7:101513800-101517200	Weak transcription	Brain Inferior Temporal Lobe	brain
22	chr7:101513800-101517200	Weak transcription	Osteobl	bone
23	chr7:101513800-101517400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr7:101513800-101518200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
25	chr7:101514000-101517200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr7:101514000-101517200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr7:101514000-101517200	Weak transcription	Fetal Lung	lung
28	chr7:101514000-101517200	Weak transcription	HSMM	muscle
29	chr7:101514000-101517600	Weak transcription	Brain Cingulate Gyrus	brain
30	chr7:101514000-101517600	Weak transcription	Brain Substantia Nigra	brain
31	chr7:101514000-101517800	Weak transcription	Brain Angular Gyrus	brain
32	chr7:101514200-101517200	Weak transcription	Muscle Satellite Cultured Cells	--
33	chr7:101514200-101517200	Weak transcription	Rectal Smooth Muscle	rectum
34	chr7:101514200-101517200	Weak transcription	HSMMtube	muscle
35	chr7:101514200-101517400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr7:101514200-101518200	Weak transcription	Brain Anterior Caudate	brain
37	chr7:101514200-101518600	Weak transcription	Stomach Mucosa	stomach
38	chr7:101514200-101521200	Weak transcription	Rectal Mucosa Donor 29	rectum
39	chr7:101514200-101522200	Weak transcription	HepG2	liver
40	chr7:101514200-101523800	Weak transcription	Fetal Kidney	kidney
41	chr7:101514400-101517200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
42	chr7:101514400-101517200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
43	chr7:101514400-101517200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
44	chr7:101514400-101517200	Weak transcription	Brain Germinal Matrix	brain
45	chr7:101514400-101517200	Weak transcription	Colon Smooth Muscle	Colon
46	chr7:101514400-101517200	Weak transcription	Skeletal Muscle Male	skeletal muscle
47	chr7:101514400-101517400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
48	chr7:101514400-101517400	Weak transcription	Ovary	ovary
49	chr7:101514400-101517600	Weak transcription	Brain Hippocampus Middle	brain
50	chr7:101514400-101517600	Weak transcription	Fetal Intestine Small	intestine

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