Variant report

Variant	rs13241983
Chromosome Location	chr7:126273998-126273999
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs1008905	0.82[CEU][hapmap];0.92[CHB][hapmap];0.82[EUR][1000 genomes]
rs1024417	0.81[CHB][hapmap]
rs10279616	0.82[CEU][hapmap];0.85[CHB][hapmap];0.84[EUR][1000 genomes]
rs11760596	1.00[CHB][hapmap];0.90[JPT][hapmap];0.95[ASN][1000 genomes]
rs12538632	1.00[CHB][hapmap];0.90[JPT][hapmap];0.95[ASN][1000 genomes]
rs12667118	0.82[EUR][1000 genomes]
rs12671690	0.95[ASN][1000 genomes]
rs12706737	0.95[ASN][1000 genomes]
rs12706739	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap]
rs13227344	0.93[ASN][1000 genomes]
rs13234319	1.00[CHB][hapmap];0.90[JPT][hapmap];0.95[ASN][1000 genomes]
rs13241597	0.95[ASN][1000 genomes]
rs13243112	0.82[CEU][hapmap];0.86[CHB][hapmap];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1419482	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap]
rs1419483	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap]
rs1579214	0.82[CEU][hapmap];0.92[CHB][hapmap]
rs17611244	0.82[CEU][hapmap]
rs1815973	0.82[CEU][hapmap];0.92[CHB][hapmap];0.82[EUR][1000 genomes]
rs1833071	0.95[ASN][1000 genomes]
rs2073863	0.85[CHB][hapmap];0.90[JPT][hapmap];0.92[ASN][1000 genomes]
rs2237764	0.82[EUR][1000 genomes]
rs2237765	0.82[CEU][hapmap]
rs2283068	0.82[CEU][hapmap];0.93[CHB][hapmap];0.82[EUR][1000 genomes]
rs2283069	0.82[CEU][hapmap];0.92[CHB][hapmap];0.82[EUR][1000 genomes]
rs2299460	1.00[CHB][hapmap];0.90[JPT][hapmap];0.95[ASN][1000 genomes]
rs2299492	0.82[CEU][hapmap];0.85[CHB][hapmap];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2299497	0.81[CHB][hapmap]
rs2896374	0.82[CEU][hapmap];0.85[CHB][hapmap];0.84[EUR][1000 genomes]
rs34261190	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs35009695	0.84[EUR][1000 genomes]
rs36198401	0.95[ASN][1000 genomes]
rs3808152	0.82[CEU][hapmap];0.85[CHB][hapmap];0.84[EUR][1000 genomes]
rs3808153	0.82[CEU][hapmap];0.93[CHB][hapmap];0.82[EUR][1000 genomes]
rs4728051	0.80[CHB][hapmap]
rs4731317	1.00[CHB][hapmap];0.90[JPT][hapmap]
rs4731321	0.82[CEU][hapmap];0.93[CHB][hapmap];0.82[EUR][1000 genomes]
rs6467088	0.93[ASN][1000 genomes]
rs6467089	0.95[ASN][1000 genomes]
rs6954055	0.80[JPT][hapmap]
rs6960925	1.00[CHB][hapmap];0.95[JPT][hapmap];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529300	chr7:125669493-126587858	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv1032938	chr7:126067684-126587859	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv539119	chr7:126067684-126587859	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv889187	chr7:126219766-126478190	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
5	esv3367822	chr7:126271684-126278372	Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv20925	chr7:126271757-126278927	Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
7	esv3350870	chr7:126273016-126276814	Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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