Variant report
| Variant | rs13247972 |
|---|---|
| Chromosome Location | chr7:145385927-145385928 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr7:145378460..145381442-chr7:145382411..145386891,5 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000230746 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:16)
| rs_ID | r2[population] |
|---|---|
| rs10952633 | 0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs10952634 | 0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs1100717 | 0.95[ASN][1000 genomes] |
| rs11771813 | 0.97[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs1880135 | 0.87[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs6948622 | 0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs6956918 | 0.87[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs6970702 | 0.84[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs850545 | 0.81[ASN][1000 genomes] |
| rs850552 | 0.81[ASN][1000 genomes] |
| rs850554 | 0.81[ASN][1000 genomes] |
| rs850555 | 0.81[ASN][1000 genomes] |
| rs850557 | 0.81[ASN][1000 genomes] |
| rs850559 | 0.81[ASN][1000 genomes] |
| rs850560 | 0.81[ASN][1000 genomes] |
| rs850561 | 0.81[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv831180 | chr7:145263906-145425845 | ZNF genes & repeats Enhancers Active TSS Genic enhancers Weak transcription Bivalent Enhancer Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 2 | esv2754040 | chr7:145303352-145698352 | Enhancers Weak transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 3 | esv2755386 | chr7:145303352-145698352 | Genic enhancers Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 4 | nsv511996 | chr7:145383882-145386044 | Inactive region | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
