Variant report

Variant	rs13248275
Chromosome Location	chr8:63460918-63460919
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:63460557..63464454-chr8:63467643..63469936,3	MCF-7	breast:

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10086439	1.00[ASN][1000 genomes]
rs11986003	1.00[ASN][1000 genomes]
rs11988844	1.00[ASN][1000 genomes]
rs11990729	1.00[ASN][1000 genomes]
rs11993139	1.00[ASN][1000 genomes]
rs11994250	1.00[ASN][1000 genomes]
rs11997540	1.00[ASN][1000 genomes]
rs13260313	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13268135	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13439148	1.00[ASN][1000 genomes]
rs13439149	1.00[ASN][1000 genomes]
rs16929324	1.00[ASN][1000 genomes]
rs16929355	1.00[ASN][1000 genomes]
rs16929366	1.00[ASN][1000 genomes]
rs16929379	1.00[ASN][1000 genomes]
rs16929380	1.00[ASN][1000 genomes]
rs16929392	1.00[ASN][1000 genomes]
rs16929407	1.00[ASN][1000 genomes]
rs16929409	1.00[ASN][1000 genomes]
rs16929424	1.00[ASN][1000 genomes]
rs16929428	1.00[ASN][1000 genomes]
rs17840589	1.00[ASN][1000 genomes]
rs2127562	1.00[ASN][1000 genomes]
rs2127563	1.00[ASN][1000 genomes]
rs2127564	1.00[ASN][1000 genomes]
rs28608015	1.00[ASN][1000 genomes]
rs2882923	0.83[EUR][1000 genomes]
rs34160114	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35029520	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35915553	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4562311	1.00[ASN][1000 genomes]
rs56083055	1.00[ASN][1000 genomes]
rs57786242	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59113187	1.00[ASN][1000 genomes]
rs60508325	1.00[ASN][1000 genomes]
rs61408776	1.00[ASN][1000 genomes]
rs6472043	1.00[ASN][1000 genomes]
rs6997907	1.00[ASN][1000 genomes]
rs7007446	1.00[ASN][1000 genomes]
rs7016043	1.00[ASN][1000 genomes]
rs73682630	1.00[ASN][1000 genomes]
rs73682631	1.00[ASN][1000 genomes]
rs73683352	1.00[ASN][1000 genomes]
rs73685419	1.00[ASN][1000 genomes]
rs7820024	1.00[ASN][1000 genomes]
rs7839654	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs961828	1.00[ASN][1000 genomes]
rs9969432	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018879	chr8:63281724-63937632	Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv831339	chr8:63312449-63501127	Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv890959	chr8:63449156-63515522	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	esv2761431	chr8:63458672-63467199	Weak transcription Enhancers Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:63459200-63462800	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr8:63459800-63462600	Weak transcription	Fetal Brain Female	brain
3	chr8:63459800-63465400	Weak transcription	Colon Smooth Muscle	Colon
4	chr8:63460200-63461000	Weak transcription	Fetal Brain Male	brain

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