Variant report

Variant	rs13249875
Chromosome Location	chr8:63229243-63229244
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10090048	0.82[EUR][1000 genomes]
rs10090858	0.96[ASN][1000 genomes]
rs10094502	0.82[EUR][1000 genomes]
rs10095168	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10099748	0.89[EUR][1000 genomes]
rs10101551	0.82[EUR][1000 genomes]
rs10448028	0.81[EUR][1000 genomes]
rs1154592	0.86[EUR][1000 genomes]
rs11778470	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12216817	0.92[EUR][1000 genomes]
rs12548234	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12549042	0.81[EUR][1000 genomes]
rs12679323	0.89[EUR][1000 genomes]
rs13250200	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13252919	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13255752	0.88[EUR][1000 genomes]
rs13261910	0.82[EUR][1000 genomes]
rs13262465	0.81[EUR][1000 genomes]
rs13264993	0.81[EUR][1000 genomes]
rs13268451	0.82[EUR][1000 genomes]
rs13271280	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13281158	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1351702	0.82[EUR][1000 genomes]
rs1384675	0.85[EUR][1000 genomes]
rs1384683	0.82[EUR][1000 genomes]
rs1384684	0.82[EUR][1000 genomes]
rs1483165	0.86[EUR][1000 genomes]
rs1483173	0.81[EUR][1000 genomes]
rs1483177	0.81[EUR][1000 genomes]
rs1552205	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2272014	0.81[EUR][1000 genomes]
rs2351652	0.90[EUR][1000 genomes]
rs2351653	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs28556827	0.97[ASN][1000 genomes]
rs2882742	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4262319	0.80[EUR][1000 genomes]
rs4532584	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4532585	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4637821	0.89[EUR][1000 genomes]
rs4738948	0.81[EUR][1000 genomes]
rs5020321	0.80[EUR][1000 genomes]
rs6983788	0.81[EUR][1000 genomes]
rs7002566	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7017869	0.87[EUR][1000 genomes]
rs7017975	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7827326	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7834815	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs900491	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs900492	0.87[EUR][1000 genomes]
rs9298062	0.81[EUR][1000 genomes]
rs9643536	0.87[EUR][1000 genomes]
rs9643537	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9792368	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019143	chr8:63142202-63390820	Bivalent/Poised TSS Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv2757277	chr8:63156123-63260182	Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	esv2759621	chr8:63156123-63260182	Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv6225	chr8:63214240-63262285	Enhancers Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
5	nsv818635	chr8:63215615-63245683	Enhancers Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:63225600-63234400	Weak transcription	Cortex derived primary cultured neurospheres	brain

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