Variant report

Variant	rs1325435
Chromosome Location	chr1:92931263-92931264
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:92931060..92931814-chr12:51567114..51568094,2	NB4	blood:
2	chr1:92930622..92931457-chr10:103124108..103124630,2	NB4	blood:

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs10874637	0.88[ASN][1000 genomes]
rs10875349	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.87[TSI][hapmap]
rs11164288	0.86[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.86[EUR][1000 genomes]
rs11164349	0.83[EUR][1000 genomes]
rs11164546	0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11578098	1.00[JPT][hapmap]
rs11581176	1.00[JPT][hapmap]
rs11589122	1.00[JPT][hapmap]
rs11589858	0.84[YRI][hapmap]
rs11800771	1.00[JPT][hapmap]
rs11800848	1.00[JPT][hapmap]
rs11803383	0.87[EUR][1000 genomes]
rs11803457	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[MEX][hapmap];0.89[TSI][hapmap];0.82[EUR][1000 genomes]
rs11804321	1.00[JPT][hapmap]
rs11805007	1.00[JPT][hapmap]
rs11808092	1.00[JPT][hapmap]
rs12024731	0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12086394	0.81[EUR][1000 genomes]
rs12740246	0.83[YRI][hapmap]
rs12743520	1.00[JPT][hapmap]
rs12756786	1.00[JPT][hapmap]
rs12757533	0.84[YRI][hapmap]
rs1415296	1.00[JPT][hapmap]
rs1487536	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[MEX][hapmap];0.89[TSI][hapmap];0.80[EUR][1000 genomes]
rs1487540	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[MEX][hapmap];0.89[TSI][hapmap]
rs1542685	0.92[CEU][hapmap];1.00[CHB][hapmap]
rs2087194	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.84[MEX][hapmap];0.89[TSI][hapmap]
rs3103178	0.86[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.84[EUR][1000 genomes]
rs3103181	0.96[CEU][hapmap];1.00[CHB][hapmap]
rs3131814	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.87[MEX][hapmap];0.89[TSI][hapmap]
rs3790450	1.00[JPT][hapmap]
rs3929737	0.83[EUR][1000 genomes]
rs4393167	0.83[EUR][1000 genomes]
rs4414050	0.87[EUR][1000 genomes]
rs4642892	1.00[JPT][hapmap]
rs4658300	0.92[CEU][hapmap];1.00[CHB][hapmap];0.80[EUR][1000 genomes]
rs58394161	0.88[ASN][1000 genomes]
rs6603962	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[MEX][hapmap];0.89[TSI][hapmap]
rs6603971	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6603973	0.88[ASN][1000 genomes]
rs6603974	0.88[ASN][1000 genomes]
rs6604088	0.84[EUR][1000 genomes]
rs6604090	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[MEX][hapmap];0.89[TSI][hapmap]
rs6661384	0.92[CEU][hapmap];1.00[CHB][hapmap];0.85[CHD][hapmap];0.88[MEX][hapmap];0.89[TSI][hapmap]
rs6663114	0.81[EUR][1000 genomes]
rs6663118	0.80[EUR][1000 genomes]
rs6663278	0.92[CEU][hapmap];1.00[CHB][hapmap]
rs6668803	0.86[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.86[EUR][1000 genomes]
rs6702267	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[MEX][hapmap];0.89[TSI][hapmap]
rs733012	0.84[EUR][1000 genomes]
rs745793	0.83[EUR][1000 genomes]
rs7517541	0.89[CEU][hapmap];1.00[CHB][hapmap];0.83[EUR][1000 genomes]
rs7518974	0.82[EUR][1000 genomes]
rs7520275	0.92[CEU][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs7539757	0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7543947	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[MEX][hapmap];0.89[TSI][hapmap];0.83[EUR][1000 genomes]
rs7554154	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs912794	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9943178	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv523354	chr1:92931263-93064823	Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:92925600-92946000	Weak transcription	Right Atrium	heart
2	chr1:92925800-92931400	Enhancers	Primary hematopoietic stem cells short term culture	blood
3	chr1:92925800-92931800	Weak transcription	Primary B cells from peripheral blood	blood
4	chr1:92926200-92934200	Enhancers	Dnd41	blood
5	chr1:92926400-92933600	Enhancers	Primary neutrophils fromperipheralblood	blood
6	chr1:92928600-92932000	Weak transcription	Primary B cells from cord blood	blood
7	chr1:92928600-92933000	Enhancers	Primary T helper naive cells from peripheral blood	blood
8	chr1:92928600-92933000	Enhancers	Primary T helper cells fromperipheralblood	blood
9	chr1:92928600-92933400	Enhancers	Primary T cells from cord blood	blood
10	chr1:92928800-92932000	Enhancers	Primary T killer memory cells from peripheral blood	blood
11	chr1:92929000-92933400	Enhancers	Thymus	Thymus
12	chr1:92929200-92931800	Enhancers	Fetal Thymus	thymus
13	chr1:92929400-92940600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
14	chr1:92929600-92932600	Enhancers	Primary monocytes fromperipheralblood	blood
15	chr1:92929600-92933000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr1:92929600-92933400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
17	chr1:92929600-92933400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr1:92929600-92933600	Enhancers	Primary hematopoietic stem cells	blood
19	chr1:92929600-92940800	Weak transcription	Duodenum Mucosa	Duodenum
20	chr1:92930000-92932800	Enhancers	GM12878-XiMat	blood
21	chr1:92930400-92931600	Weak transcription	Monocytes-CD14+_RO01746	blood
22	chr1:92930600-92939000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
23	chr1:92930600-92939400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
24	chr1:92930800-92931800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
25	chr1:92930800-92932400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
26	chr1:92930800-92944400	Weak transcription	Spleen	Spleen
27	chr1:92931000-92932000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
28	chr1:92931000-92939000	Weak transcription	Primary T cells fromperipheralblood	blood
29	chr1:92931000-92939000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
30	chr1:92931200-92931600	Weak transcription	Primary T helper cells PMA-I stimulated	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links