Variant report

Variant	rs13257672
Chromosome Location	chr8:110220220-110220221
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:110193763..110196716-chr8:110219101..110221509,2	MCF-7	breast:

Extended variants
information (count: 80 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:76)

rs_ID	r²[population]
rs10091155	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs10100690	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10103516	0.81[AMR][1000 genomes]
rs10464819	0.86[AMR][1000 genomes]
rs10464848	0.86[AMR][1000 genomes]
rs10464849	0.86[AMR][1000 genomes]
rs10955511	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10955513	0.81[EUR][1000 genomes]
rs10955514	0.85[AMR][1000 genomes]
rs11995419	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12546985	0.85[AMR][1000 genomes]
rs12674513	0.86[AMR][1000 genomes]
rs12674533	0.86[AMR][1000 genomes]
rs12679958	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12680451	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12682610	0.84[AMR][1000 genomes]
rs13251321	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs13251597	0.81[EUR][1000 genomes]
rs1380098	0.83[AMR][1000 genomes]
rs1380099	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1458921	0.85[AMR][1000 genomes]
rs1548082	0.83[AMR][1000 genomes]
rs1585295	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1947630	0.83[AMR][1000 genomes]
rs2007179	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2067780	0.83[AMR][1000 genomes]
rs2085628	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs2085629	0.86[AMR][1000 genomes]
rs2125512	0.85[AMR][1000 genomes]
rs2168965	0.82[AMR][1000 genomes]
rs28407429	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2882176	0.86[AMR][1000 genomes]
rs28870477	0.86[AMR][1000 genomes]
rs2926223	0.85[AMR][1000 genomes]
rs2980587	0.83[AMR][1000 genomes]
rs2980590	0.83[AMR][1000 genomes]
rs2980595	0.81[AMR][1000 genomes]
rs2980598	0.81[AMR][1000 genomes]
rs2980599	0.81[AMR][1000 genomes]
rs2980609	0.83[AMR][1000 genomes]
rs34049275	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs35850605	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs3890699	0.81[EUR][1000 genomes]
rs4034230	0.92[AMR][1000 genomes]
rs4130640	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4236803	0.81[EUR][1000 genomes]
rs4236804	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4257986	0.81[EUR][1000 genomes]
rs4265160	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4273834	0.86[AMR][1000 genomes]
rs4288351	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4291240	0.81[EUR][1000 genomes]
rs4311632	0.81[EUR][1000 genomes]
rs4332104	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4339614	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4389900	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs4454252	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4570131	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4604407	0.87[AMR][1000 genomes]
rs4734203	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4734204	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4734205	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4735114	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4735116	0.86[AMR][1000 genomes]
rs4735118	0.86[AMR][1000 genomes]
rs4735121	0.85[AMR][1000 genomes]
rs55765942	0.86[AMR][1000 genomes]
rs62511091	0.80[EUR][1000 genomes]
rs6469245	0.81[EUR][1000 genomes]
rs6988041	0.88[AMR][1000 genomes]
rs6998731	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6998883	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7008174	0.86[AMR][1000 genomes]
rs7817746	0.84[AMR][1000 genomes]
rs7817909	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs922044	0.86[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023204	chr8:110169573-110303085	Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Active TSS	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1031663	chr8:110177432-110303085	Weak transcription Genic enhancers Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv891272	chr8:110217266-110268104	Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Enhancers Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv891273	chr8:110219735-110475874	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:110191400-110237400	Weak transcription	Left Ventricle	heart
2	chr8:110202000-110221400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr8:110204800-110230600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr8:110211200-110311600	Weak transcription	Right Ventricle	heart
5	chr8:110216800-110220800	Weak transcription	HSMM	muscle

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