Variant report

Variant	rs13259874
Chromosome Location	chr8:63516912-63516913
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs1531658	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16929279	0.86[ASN][1000 genomes]
rs16929282	0.86[ASN][1000 genomes]
rs827681	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018879	chr8:63281724-63937632	Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv831340	chr8:63515126-63702660	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:63515000-63518000	Enhancers	Fetal Lung	lung
2	chr8:63515600-63517000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr8:63516000-63519200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr8:63516200-63517000	Enhancers	H1 Cell Line	embryonic stem cell
5	chr8:63516200-63517000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr8:63516200-63517000	Enhancers	H9 Cell Line	embryonic stem cell
7	chr8:63516200-63517000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr8:63516200-63517000	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr8:63516200-63517000	Enhancers	HUES6 Cell Line	embryonic stem cell
10	chr8:63516200-63517000	Enhancers	iPS-15b Cell Line	embryonic stem cell
11	chr8:63516200-63517000	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
12	chr8:63516200-63517000	Enhancers	iPS-20b Cell Line	embryonic stem cell
13	chr8:63516200-63517200	Enhancers	HUES64 Cell Line	embryonic stem cell
14	chr8:63516600-63517000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr8:63516800-63517000	Enhancers	Fetal Brain Female	brain
16	chr8:63516800-63518600	Weak transcription	Fetal Kidney	kidney

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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