Variant report

Variant	rs13260821
Chromosome Location	chr8:10712027-10712028
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:10709949..10712901-chr8:10721572..10724488,2	K562	blood:
2	chr8:10711587..10713736-chr8:10731150..10732656,2	K562	blood:

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10102073	1.00[CHB][hapmap]
rs11786713	1.00[CHB][hapmap]
rs11997941	1.00[CHB][hapmap]
rs13259547	1.00[CHB][hapmap]
rs13261103	1.00[CHB][hapmap]
rs13272595	0.94[AMR][1000 genomes]
rs13275368	1.00[CHB][hapmap]
rs13280573	1.00[CHB][hapmap]
rs17152329	1.00[CHB][hapmap]
rs17152399	1.00[CHB][hapmap]
rs17152492	1.00[CHB][hapmap]
rs17152619	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17152632	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17721019	0.84[EUR][1000 genomes]
rs2409654	1.00[CHB][hapmap]
rs2409655	1.00[CHB][hapmap]
rs2409656	1.00[CHB][hapmap]
rs2898244	1.00[CHB][hapmap]
rs4129653	1.00[CHB][hapmap]
rs4310166	1.00[CHB][hapmap]
rs61064518	0.84[EUR][1000 genomes]
rs6601537	1.00[CHB][hapmap]
rs6601538	1.00[CHB][hapmap]
rs6983778	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6987083	1.00[CHB][hapmap]
rs6989930	0.83[TSI][hapmap]
rs6990041	0.83[TSI][hapmap]
rs6992312	0.88[TSI][hapmap]
rs6993463	1.00[CHB][hapmap]
rs6993632	1.00[CHB][hapmap];0.83[TSI][hapmap]
rs6993753	1.00[CHB][hapmap];0.88[TSI][hapmap]
rs7005389	1.00[CHB][hapmap];1.00[GIH][hapmap];0.88[TSI][hapmap]
rs7010246	1.00[CHB][hapmap]
rs7813417	1.00[CHB][hapmap]
rs7822821	1.00[CHB][hapmap]
rs7824878	1.00[CHB][hapmap]
rs7840610	1.00[CHB][hapmap]
rs7840769	1.00[CHB][hapmap]
rs891557	1.00[CHB][hapmap]
rs934325	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917085	chr8:10237508-10828204	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
2	nsv1026802	chr8:10576444-10754489	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases
3	nsv539469	chr8:10576444-10754489	Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases
4	nsv1017836	chr8:10591801-10803617	Enhancers ZNF genes & repeats Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
5	nsv1034988	chr8:10591801-10804243	Genic enhancers Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
6	nsv831232	chr8:10606053-10774948	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	12 gene(s)	inside rSNPs	diseases
7	nsv1031726	chr8:10627742-10749369	Active TSS Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	11 gene(s)	inside rSNPs	diseases
8	nsv508497	chr8:10680621-10750255	Genic enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:10708600-10712200	Weak transcription	NHEK	skin
2	chr8:10708600-10712800	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr8:10708600-10713200	Weak transcription	Brain Angular Gyrus	brain
4	chr8:10708600-10715400	Weak transcription	Right Atrium	heart
5	chr8:10708800-10712200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr8:10708800-10712200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr8:10708800-10712800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr8:10708800-10712800	Weak transcription	HMEC	breast
9	chr8:10709400-10712200	Weak transcription	Brain Anterior Caudate	brain
10	chr8:10709600-10720400	Weak transcription	Pancreas	Pancrea
11	chr8:10710200-10718200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr8:10711600-10712200	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr8:10711600-10713600	Enhancers	Fetal Brain Male	brain
14	chr8:10711600-10714800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr8:10711800-10713600	Enhancers	Fetal Brain Female	brain
16	chr8:10712000-10712200	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain

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