Variant report

Variant	rs13261836
Chromosome Location	chr8:9941175-9941176
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:9930550..9933030-chr8:9938731..9941412,2	K562	blood:

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10107485	0.81[CHB][hapmap];0.81[JPT][hapmap]
rs11249968	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11249969	1.00[CEU][hapmap];0.87[CHB][hapmap];0.86[JPT][hapmap];0.81[YRI][hapmap];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11249970	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1160369	0.92[CEU][hapmap];0.86[CHB][hapmap]
rs11774411	0.82[CHB][hapmap]
rs11783851	0.82[CHB][hapmap]
rs11785434	0.96[CEU][hapmap];0.81[JPT][hapmap];0.95[YRI][hapmap];0.83[EUR][1000 genomes]
rs12155541	0.90[EUR][1000 genomes]
rs12542030	0.88[CEU][hapmap]
rs12545826	0.95[CHB][hapmap];0.95[JPT][hapmap];0.94[ASN][1000 genomes]
rs12547884	0.83[CHB][hapmap]
rs12550614	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12679328	0.84[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap]
rs12680389	0.83[CHB][hapmap];0.91[JPT][hapmap]
rs13249013	0.87[CEU][hapmap];0.87[CHB][hapmap];0.80[EUR][1000 genomes]
rs13250499	1.00[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.95[YRI][hapmap];0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13272793	0.94[YRI][hapmap]
rs13279619	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13279701	0.95[YRI][hapmap]
rs1484641	1.00[YRI][hapmap]
rs1564808	0.91[CEU][hapmap];0.86[CHB][hapmap];0.83[EUR][1000 genomes]
rs17690549	0.95[YRI][hapmap]
rs17746227	0.95[YRI][hapmap]
rs17747335	0.94[YRI][hapmap]
rs2409632	1.00[CEU][hapmap];0.96[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2628138	0.87[EUR][1000 genomes]
rs2898242	0.88[CEU][hapmap];0.87[CHB][hapmap]
rs3735823	1.00[CEU][hapmap];0.87[CHB][hapmap];0.86[JPT][hapmap];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4840462	0.85[CEU][hapmap];0.87[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap]
rs4840463	0.87[CEU][hapmap]
rs4841277	0.82[AFR][1000 genomes];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4841279	0.96[CEU][hapmap];0.83[CHB][hapmap];0.91[JPT][hapmap];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs625218	0.84[CEU][hapmap];0.83[CHB][hapmap];0.91[JPT][hapmap]
rs685218	1.00[CEU][hapmap];0.87[JPT][hapmap];0.86[EUR][1000 genomes]
rs6981546	0.96[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6983566	1.00[CEU][hapmap];0.87[CHB][hapmap];0.86[JPT][hapmap];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6985941	0.89[YRI][hapmap]
rs6988046	0.83[CHB][hapmap]
rs6997865	0.85[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.95[YRI][hapmap]
rs7008407	0.91[CEU][hapmap];0.86[CHB][hapmap]
rs7012221	0.87[CEU][hapmap];0.95[CHB][hapmap];0.87[JPT][hapmap];0.94[YRI][hapmap];0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7831989	0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7832431	0.91[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs814421	0.82[ASN][1000 genomes]
rs814422	0.82[ASN][1000 genomes]
rs814424	0.83[CHB][hapmap];0.82[ASN][1000 genomes]
rs860068	0.84[CHB][hapmap];0.82[ASN][1000 genomes]
rs9329215	0.88[CEU][hapmap];0.87[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916493	chr8:9806580-10029482	Weak transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv610263	chr8:9941021-10090149	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:9913200-9944800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr8:9914800-9947200	Weak transcription	Left Ventricle	heart
3	chr8:9929600-9947200	Weak transcription	Aorta	Aorta
4	chr8:9936200-9944200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr8:9936600-9941600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr8:9938600-9942000	Enhancers	Fetal Brain Male	brain
7	chr8:9938800-9944800	Weak transcription	Primary B cells from cord blood	blood
8	chr8:9939600-9942000	Enhancers	Fetal Brain Female	brain
9	chr8:9940000-9949400	Weak transcription	Spleen	Spleen
10	chr8:9940200-9942200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr8:9940200-9948600	Weak transcription	Primary T cells from cord blood	blood
12	chr8:9940400-9941400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr8:9940400-9941600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr8:9940400-9941800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr8:9940600-9944200	Weak transcription	Primary neutrophils fromperipheralblood	blood
16	chr8:9940800-9941400	Enhancers	Muscle Satellite Cultured Cells	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links